Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10b24
         (675 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC006554-1|AAH06554.1|   87|Homo sapiens MRPS21 protein protein.       98   3e-20
BC004566-1|AAH04566.2|   87|Homo sapiens mitochondrial ribosomal...    98   3e-20
AL138795-15|CAI22820.1|   87|Homo sapiens mitochondrial ribosoma...    98   3e-20
AB049955-1|BAB41008.1|   87|Homo sapiens mitochondrial ribosomal...    98   3e-20
AF182417-1|AAG14953.1|   75|Homo sapiens MDS016 protein.               84   5e-16

>BC006554-1|AAH06554.1|   87|Homo sapiens MRPS21 protein protein.
          Length = 87

 Score = 97.9 bits (233), Expect = 3e-20
 Identities = 41/85 (48%), Positives = 62/85 (72%)
 Frame = +2

Query: 143 RHPSFIARTVFVQNNDIDNACRLINRIMGKEGLLAQYRLTRYYEKPFQTRRRVNHEKCKA 322
           +H  FIARTV VQ  ++++A R +NRI+  +GL+   +  RYYEKP + R+R ++E+C+ 
Sbjct: 3   KHLKFIARTVMVQEGNVESAYRTLNRILTMDGLIEDIKHRRYYEKPCRRRQRESYERCRR 62

Query: 323 IYNEDMERKIQFVLRKNRHEPFPGC 397
           IYN +M RKI F++RKNR +P+ GC
Sbjct: 63  IYNMEMARKINFLMRKNRADPWQGC 87


>BC004566-1|AAH04566.2|   87|Homo sapiens mitochondrial ribosomal
           protein S21 protein.
          Length = 87

 Score = 97.9 bits (233), Expect = 3e-20
 Identities = 41/85 (48%), Positives = 62/85 (72%)
 Frame = +2

Query: 143 RHPSFIARTVFVQNNDIDNACRLINRIMGKEGLLAQYRLTRYYEKPFQTRRRVNHEKCKA 322
           +H  FIARTV VQ  ++++A R +NRI+  +GL+   +  RYYEKP + R+R ++E+C+ 
Sbjct: 3   KHLKFIARTVMVQEGNVESAYRTLNRILTMDGLIEDIKHRRYYEKPCRRRQRESYERCRR 62

Query: 323 IYNEDMERKIQFVLRKNRHEPFPGC 397
           IYN +M RKI F++RKNR +P+ GC
Sbjct: 63  IYNMEMARKINFLMRKNRADPWQGC 87


>AL138795-15|CAI22820.1|   87|Homo sapiens mitochondrial ribosomal
           protein S21 protein.
          Length = 87

 Score = 97.9 bits (233), Expect = 3e-20
 Identities = 41/85 (48%), Positives = 62/85 (72%)
 Frame = +2

Query: 143 RHPSFIARTVFVQNNDIDNACRLINRIMGKEGLLAQYRLTRYYEKPFQTRRRVNHEKCKA 322
           +H  FIARTV VQ  ++++A R +NRI+  +GL+   +  RYYEKP + R+R ++E+C+ 
Sbjct: 3   KHLKFIARTVMVQEGNVESAYRTLNRILTMDGLIEDIKHRRYYEKPCRRRQRESYERCRR 62

Query: 323 IYNEDMERKIQFVLRKNRHEPFPGC 397
           IYN +M RKI F++RKNR +P+ GC
Sbjct: 63  IYNMEMARKINFLMRKNRADPWQGC 87


>AB049955-1|BAB41008.1|   87|Homo sapiens mitochondrial ribosomal
           protein S21 protein.
          Length = 87

 Score = 97.9 bits (233), Expect = 3e-20
 Identities = 41/85 (48%), Positives = 62/85 (72%)
 Frame = +2

Query: 143 RHPSFIARTVFVQNNDIDNACRLINRIMGKEGLLAQYRLTRYYEKPFQTRRRVNHEKCKA 322
           +H  FIARTV VQ  ++++A R +NRI+  +GL+   +  RYYEKP + R+R ++E+C+ 
Sbjct: 3   KHLKFIARTVMVQEGNVESAYRTLNRILTMDGLIEDIKHRRYYEKPCRRRQRESYERCRR 62

Query: 323 IYNEDMERKIQFVLRKNRHEPFPGC 397
           IYN +M RKI F++RKNR +P+ GC
Sbjct: 63  IYNMEMARKINFLMRKNRADPWQGC 87


>AF182417-1|AAG14953.1|   75|Homo sapiens MDS016 protein.
          Length = 75

 Score = 83.8 bits (198), Expect = 5e-16
 Identities = 34/74 (45%), Positives = 54/74 (72%)
 Frame = +2

Query: 176 VQNNDIDNACRLINRIMGKEGLLAQYRLTRYYEKPFQTRRRVNHEKCKAIYNEDMERKIQ 355
           VQ  ++++A R +NRI+  +GL+   +  RYYEKP + R+R ++E+C+ IYN +M RKI 
Sbjct: 2   VQEGNVESAYRTLNRILTMDGLIEDIKHRRYYEKPCRRRQRESYERCRRIYNMEMARKIN 61

Query: 356 FVLRKNRHEPFPGC 397
           F++RKNR +P+ GC
Sbjct: 62  FLMRKNRADPWQGC 75


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,763,562
Number of Sequences: 237096
Number of extensions: 1833325
Number of successful extensions: 2888
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2888
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7615267504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)