Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0042
         (642 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D87440-1|BAA13382.2|  702|Homo sapiens KIAA0252 protein.               59   2e-08
BC015052-1|AAH15052.1|  585|Homo sapiens Rtf1, Paf1/RNA polymera...    59   2e-08

>D87440-1|BAA13382.2|  702|Homo sapiens KIAA0252 protein.
          Length = 702

 Score = 58.8 bits (136), Expect = 2e-08
 Identities = 40/127 (31%), Positives = 56/127 (44%)
 Frame = +2

Query: 152 DPFTRRHTKPVMNFKSQSSRSQELISNXXXXXXXXXXXXXXXXXXXXXXXXDRLENHEEA 331
           DPFTRR  KP +   S+    Q  I                          D+  N + A
Sbjct: 584 DPFTRRQCKPTIVSNSRDPAVQAAILAQLNAKYGSGVLPDAPKEMSKGQGKDKDLNSKSA 643

Query: 332 KRSRGEHPTSSDTSLYSLHDFEINIDLDLPAAKSVSSQPKQVTTKVKETGPKRSLNLEEY 511
                    S D  L+ +HDF++ IDL +P+++S +          K+  P+RSLNLE+Y
Sbjct: 644 S------DLSED--LFKVHDFDVKIDLQVPSSESKALAITSKAPPAKDGAPRRSLNLEDY 695

Query: 512 KKRHGLI 532
           KKR GLI
Sbjct: 696 KKRRGLI 702



 Score = 34.7 bits (76), Expect = 0.28
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +3

Query: 27  RAAGSSIQSISYINNRNRKLNVETAEKAIMEEVKANKERKQTTRSR 164
           R    +I +ISYIN RNR+ N+  +EKA++ E    K ++    +R
Sbjct: 543 RQRTKNISAISYINQRNREWNIVESEKALVAESHNMKNQQMDPFTR 588


>BC015052-1|AAH15052.1|  585|Homo sapiens Rtf1, Paf1/RNA polymerase
           II complex component, homolog (S. cerevisiae) protein.
          Length = 585

 Score = 58.8 bits (136), Expect = 2e-08
 Identities = 40/127 (31%), Positives = 56/127 (44%)
 Frame = +2

Query: 152 DPFTRRHTKPVMNFKSQSSRSQELISNXXXXXXXXXXXXXXXXXXXXXXXXDRLENHEEA 331
           DPFTRR  KP +   S+    Q  I                          D+  N + A
Sbjct: 467 DPFTRRQCKPTIVSNSRDPAVQAAILAQLNAKYGSGVLPDAPKEMSKGQGKDKDLNSKSA 526

Query: 332 KRSRGEHPTSSDTSLYSLHDFEINIDLDLPAAKSVSSQPKQVTTKVKETGPKRSLNLEEY 511
                    S D  L+ +HDF++ IDL +P+++S +          K+  P+RSLNLE+Y
Sbjct: 527 S------DLSED--LFKVHDFDVKIDLQVPSSESKALAITSKAPPAKDGAPRRSLNLEDY 578

Query: 512 KKRHGLI 532
           KKR GLI
Sbjct: 579 KKRRGLI 585



 Score = 34.7 bits (76), Expect = 0.28
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +3

Query: 27  RAAGSSIQSISYINNRNRKLNVETAEKAIMEEVKANKERKQTTRSR 164
           R    +I +ISYIN RNR+ N+  +EKA++ E    K ++    +R
Sbjct: 426 RQRTKNISAISYINQRNREWNIVESEKALVAESHNMKNQQMDPFTR 471


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,834,515
Number of Sequences: 237096
Number of extensions: 1367106
Number of successful extensions: 3887
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3884
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7085195460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)