Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0187
(370 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D83781-1|BAA12110.1| 1314|Homo sapiens nuclear pore protein prot... 47 2e-05
BC125228-1|AAI25229.1| 1436|Homo sapiens nucleoporin 160kDa prot... 47 2e-05
BC125227-1|AAI25228.1| 1436|Homo sapiens nucleoporin 160kDa prot... 47 2e-05
BC009822-1|AAH09822.1| 190|Homo sapiens NUP160 protein protein. 47 2e-05
AK026236-1|BAB15406.1| 190|Homo sapiens protein ( Homo sapiens ... 47 2e-05
V00572-1|CAA23835.1| 417|Homo sapiens protein ( Human mRNA enco... 29 3.5
M11968-1|AAA60079.1| 417|Homo sapiens PGK1 protein. 29 3.5
L00160-1|AAA60078.1| 417|Homo sapiens phosphoglycerate kinase p... 29 3.5
CR456716-1|CAG32997.1| 417|Homo sapiens PGK1 protein. 29 3.5
BC113568-1|AAI13569.1| 417|Homo sapiens phosphoglycerate kinase... 29 3.5
BC104837-1|AAI04838.1| 417|Homo sapiens phosphoglycerate kinase... 29 3.5
BC103752-1|AAI03753.1| 417|Homo sapiens phosphoglycerate kinase... 29 3.5
BC023234-1|AAH23234.1| 417|Homo sapiens phosphoglycerate kinase... 29 3.5
AY423725-1|AAS00488.1| 417|Homo sapiens migration-inducing gene... 29 3.5
AL049589-1|CAI42951.1| 417|Homo sapiens phosphoglycerate kinase... 29 3.5
AB062432-1|BAB93495.1| 417|Homo sapiens phosphoglycerete kinase... 29 3.5
>D83781-1|BAA12110.1| 1314|Homo sapiens nuclear pore protein
protein.
Length = 1314
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Frame = +2
Query: 149 PEKWKEIVLNTGGTHSTLQD-IKLPQKAGGYWYKDSTKFY--TRNRFIYWQTTSDAIEI 316
P ++E + + GT + + +K + AGG++Y +S K + TRNRFI+W+T+ D +E+
Sbjct: 20 PRHFREFTVCSIGTANAVAGAVKYSESAGGFYYVESGKLFSVTRNRFIHWKTSGDTLEL 78
>BC125228-1|AAI25229.1| 1436|Homo sapiens nucleoporin 160kDa
protein.
Length = 1436
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Frame = +2
Query: 149 PEKWKEIVLNTGGTHSTLQD-IKLPQKAGGYWYKDSTKFY--TRNRFIYWQTTSDAIEI 316
P ++E + + GT + + +K + AGG++Y +S K + TRNRFI+W+T+ D +E+
Sbjct: 56 PRHFREFTVCSIGTANAVAGAVKYSESAGGFYYVESGKLFSVTRNRFIHWKTSGDTLEL 114
>BC125227-1|AAI25228.1| 1436|Homo sapiens nucleoporin 160kDa
protein.
Length = 1436
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Frame = +2
Query: 149 PEKWKEIVLNTGGTHSTLQD-IKLPQKAGGYWYKDSTKFY--TRNRFIYWQTTSDAIEI 316
P ++E + + GT + + +K + AGG++Y +S K + TRNRFI+W+T+ D +E+
Sbjct: 56 PRHFREFTVCSIGTANAVAGAVKYSESAGGFYYVESGKLFSVTRNRFIHWKTSGDTLEL 114
>BC009822-1|AAH09822.1| 190|Homo sapiens NUP160 protein protein.
Length = 190
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Frame = +2
Query: 149 PEKWKEIVLNTGGTHSTLQD-IKLPQKAGGYWYKDSTKFY--TRNRFIYWQTTSDAIEI 316
P ++E + + GT + + +K + AGG++Y +S K + TRNRFI+W+T+ D +E+
Sbjct: 22 PRHFREFTVCSIGTANAVAGAVKYSESAGGFYYVESGKLFSVTRNRFIHWKTSGDTLEL 80
>AK026236-1|BAB15406.1| 190|Homo sapiens protein ( Homo sapiens
cDNA: FLJ22583 fis, clone HSI02596. ).
Length = 190
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Frame = +2
Query: 149 PEKWKEIVLNTGGTHSTLQD-IKLPQKAGGYWYKDSTKFY--TRNRFIYWQTTSDAIEI 316
P ++E + + GT + + +K + AGG++Y +S K + TRNRFI+W+T+ D +E+
Sbjct: 22 PRHFREFTVCSIGTANAVAGAVKYSESAGGFYYVESGKLFSVTRNRFIHWKTSGDTLEL 80
>V00572-1|CAA23835.1| 417|Homo sapiens protein ( Human mRNA
encoding phosphoglycerate kinase. ).
Length = 417
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 191 HSTLQDIKLPQKAGGYWYKDSTKFYTR 271
HS++ + LPQKAGG+ K ++ +
Sbjct: 173 HSSMVGVNLPQKAGGFLMKKELNYFAK 199
>M11968-1|AAA60079.1| 417|Homo sapiens PGK1 protein.
Length = 417
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 191 HSTLQDIKLPQKAGGYWYKDSTKFYTR 271
HS++ + LPQKAGG+ K ++ +
Sbjct: 173 HSSMVGVNLPQKAGGFLMKKELNYFAK 199
>L00160-1|AAA60078.1| 417|Homo sapiens phosphoglycerate kinase
protein.
Length = 417
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 191 HSTLQDIKLPQKAGGYWYKDSTKFYTR 271
HS++ + LPQKAGG+ K ++ +
Sbjct: 173 HSSMVGVNLPQKAGGFLMKKELNYFAK 199
>CR456716-1|CAG32997.1| 417|Homo sapiens PGK1 protein.
Length = 417
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 191 HSTLQDIKLPQKAGGYWYKDSTKFYTR 271
HS++ + LPQKAGG+ K ++ +
Sbjct: 173 HSSMVGVNLPQKAGGFLMKKELNYFAK 199
>BC113568-1|AAI13569.1| 417|Homo sapiens phosphoglycerate kinase 1
protein.
Length = 417
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 191 HSTLQDIKLPQKAGGYWYKDSTKFYTR 271
HS++ + LPQKAGG+ K ++ +
Sbjct: 173 HSSMVGVNLPQKAGGFLMKKELNYFAK 199
>BC104837-1|AAI04838.1| 417|Homo sapiens phosphoglycerate kinase 1
protein.
Length = 417
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 191 HSTLQDIKLPQKAGGYWYKDSTKFYTR 271
HS++ + LPQKAGG+ K ++ +
Sbjct: 173 HSSMVGVNLPQKAGGFLMKKELNYFAK 199
>BC103752-1|AAI03753.1| 417|Homo sapiens phosphoglycerate kinase 1
protein.
Length = 417
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 191 HSTLQDIKLPQKAGGYWYKDSTKFYTR 271
HS++ + LPQKAGG+ K ++ +
Sbjct: 173 HSSMVGVNLPQKAGGFLMKKELNYFAK 199
>BC023234-1|AAH23234.1| 417|Homo sapiens phosphoglycerate kinase 1
protein.
Length = 417
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 191 HSTLQDIKLPQKAGGYWYKDSTKFYTR 271
HS++ + LPQKAGG+ K ++ +
Sbjct: 173 HSSMVGVNLPQKAGGFLMKKELNYFAK 199
>AY423725-1|AAS00488.1| 417|Homo sapiens migration-inducing gene 10
protein protein.
Length = 417
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 191 HSTLQDIKLPQKAGGYWYKDSTKFYTR 271
HS++ + LPQKAGG+ K ++ +
Sbjct: 173 HSSMVGVNLPQKAGGFLMKKELNYFAK 199
>AL049589-1|CAI42951.1| 417|Homo sapiens phosphoglycerate kinase 1
protein.
Length = 417
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 191 HSTLQDIKLPQKAGGYWYKDSTKFYTR 271
HS++ + LPQKAGG+ K ++ +
Sbjct: 173 HSSMVGVNLPQKAGGFLMKKELNYFAK 199
>AB062432-1|BAB93495.1| 417|Homo sapiens phosphoglycerete kinase 1
protein.
Length = 417
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 191 HSTLQDIKLPQKAGGYWYKDSTKFYTR 271
HS++ + LPQKAGG+ K ++ +
Sbjct: 173 HSSMVGVNLPQKAGGFLMKKELNYFAK 199
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,570,766
Number of Sequences: 237096
Number of extensions: 891651
Number of successful extensions: 1474
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1469
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2363825726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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