Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0066
(585 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC016445-1|AAH16445.1| 617|Homo sapiens vacuolar protein sortin... 72 2e-12
AL357472-1|CAB93109.1| 528|Homo sapiens VPS33B protein. 72 2e-12
AF308803-1|AAG34680.1| 617|Homo sapiens vacuolar protein sortin... 72 2e-12
AF201694-1|AAF91174.1| 617|Homo sapiens vacuolar protein sortin... 72 2e-12
AK027754-1|BAB55345.1| 617|Homo sapiens protein ( Homo sapiens ... 69 9e-12
L11573-1|AAB00076.1| 296|Homo sapiens 33.1 kDa protein protein. 31 2.3
BC073970-1|AAH73970.1| 855|Homo sapiens bicaudal D homolog 2 (D... 31 3.0
BC004296-1|AAH04296.1| 586|Homo sapiens BICD2 protein protein. 31 3.0
AY052562-1|AAL12246.1| 824|Homo sapiens coiled-coil protein BIC... 31 3.0
AL137074-4|CAI14370.1| 855|Homo sapiens bicaudal D homolog 2 (D... 31 3.0
AL137074-3|CAI14369.1| 824|Homo sapiens bicaudal D homolog 2 (D... 31 3.0
AL136981-2|CAI41014.1| 855|Homo sapiens bicaudal D homolog 2 (D... 31 3.0
AL136981-1|CAI41013.1| 824|Homo sapiens bicaudal D homolog 2 (D... 31 3.0
AB014599-1|BAA31674.1| 847|Homo sapiens KIAA0699 protein protein. 31 3.0
L13744-1|AAA58361.1| 568|Homo sapiens AF-9 protein. 30 5.2
D16688-1|BAA04090.1| 342|Homo sapiens LTG9/MLLT3 protein protein. 30 5.2
BC036089-1|AAH36089.1| 568|Homo sapiens myeloid/lymphoid or mix... 30 5.2
AL512635-1|CAH70705.1| 568|Homo sapiens myeloid/lymphoid or mix... 30 5.2
AL354879-1|CAI14771.1| 568|Homo sapiens myeloid/lymphoid or mix... 30 5.2
BC039821-1|AAH39821.1| 478|Homo sapiens disrupted in renal carc... 30 6.9
AK027690-1|BAB55300.1| 478|Homo sapiens protein ( Homo sapiens ... 30 6.9
BC113524-1|AAI13525.1| 578|Homo sapiens IFT74 protein protein. 29 9.1
BC023634-1|AAH23634.2| 383|Homo sapiens IFT74 protein protein. 29 9.1
AY040325-1|AAK77221.1| 600|Homo sapiens capillary morphogenesis... 29 9.1
AL356133-4|CAH72643.1| 600|Homo sapiens intraflagellar transpor... 29 9.1
AK026274-1|BAB15423.1| 310|Homo sapiens protein ( Homo sapiens ... 29 9.1
AK023707-1|BAB14650.1| 435|Homo sapiens protein ( Homo sapiens ... 29 9.1
>BC016445-1|AAH16445.1| 617|Homo sapiens vacuolar protein sorting
33 homolog B (yeast) protein.
Length = 617
Score = 71.7 bits (168), Expect = 2e-12
Identities = 50/177 (28%), Positives = 96/177 (54%), Gaps = 5/177 (2%)
Frame = +2
Query: 68 VKDT-KVMKGKLNFDSEQSNESKSTAMPLDSSIDSLYAEI*HRHFXXXXXXXXXXXXXXX 244
V DT ++ G ++F E ++ KS + L++ D ++ EI + HF
Sbjct: 251 VDDTFRIKCGSVDFGPEVTSSDKSLKVLLNAE-DKVFNEIRNEHFSNVFGFLSQKARNLQ 309
Query: 245 NEDIKALG--IQEMKHFVATKLQQVTLFKQNLVNHVLACETIISEMSNR-FENLKLTETE 415
+ + G I++MK+FV+ +L+ + + L H+ ACE+I+ + + + F+ L TE
Sbjct: 310 AQYDRRRGMDIKQMKNFVSQELKGLKQEHRLLSLHIGACESIMKKKTKQDFQELIKTEHA 369
Query: 416 MLNNRNKKTNYNFLDENFGTEIHIYNSLRLMCLLSLTQ-GLSYDEYNTLVNKYLLAF 583
+L N + + ++++E+ ++ SLRLMCLLS+T+ GL +Y +L +YL ++
Sbjct: 370 LLEGFNIRESTSYIEEHIDRQVSPIESLRLMCLLSITENGLIPKDYRSLKTQYLQSY 426
>AL357472-1|CAB93109.1| 528|Homo sapiens VPS33B protein.
Length = 528
Score = 71.7 bits (168), Expect = 2e-12
Identities = 50/177 (28%), Positives = 96/177 (54%), Gaps = 5/177 (2%)
Frame = +2
Query: 68 VKDT-KVMKGKLNFDSEQSNESKSTAMPLDSSIDSLYAEI*HRHFXXXXXXXXXXXXXXX 244
V DT ++ G ++F E ++ KS + L++ D ++ EI + HF
Sbjct: 162 VDDTFRIKCGSVDFGPEVTSSDKSLKVLLNAE-DKVFNEIRNEHFSNVFGFLSQKARNLQ 220
Query: 245 NEDIKALG--IQEMKHFVATKLQQVTLFKQNLVNHVLACETIISEMSNR-FENLKLTETE 415
+ + G I++MK+FV+ +L+ + + L H+ ACE+I+ + + + F+ L TE
Sbjct: 221 AQYDRRRGMDIKQMKNFVSQELKGLKQEHRLLSLHIGACESIMKKKTKQDFQELIKTEHA 280
Query: 416 MLNNRNKKTNYNFLDENFGTEIHIYNSLRLMCLLSLTQ-GLSYDEYNTLVNKYLLAF 583
+L N + + ++++E+ ++ SLRLMCLLS+T+ GL +Y +L +YL ++
Sbjct: 281 LLEGFNIRESTSYIEEHIDRQVSPIESLRLMCLLSITENGLIPKDYRSLKTQYLQSY 337
>AF308803-1|AAG34680.1| 617|Homo sapiens vacuolar protein sorting
protein 33B protein.
Length = 617
Score = 71.7 bits (168), Expect = 2e-12
Identities = 50/177 (28%), Positives = 96/177 (54%), Gaps = 5/177 (2%)
Frame = +2
Query: 68 VKDT-KVMKGKLNFDSEQSNESKSTAMPLDSSIDSLYAEI*HRHFXXXXXXXXXXXXXXX 244
V DT ++ G ++F E ++ KS + L++ D ++ EI + HF
Sbjct: 251 VDDTFRIKCGSVDFGPEVTSSDKSLKVLLNAE-DKVFNEIRNEHFSNVFGFLSQKARNLQ 309
Query: 245 NEDIKALG--IQEMKHFVATKLQQVTLFKQNLVNHVLACETIISEMSNR-FENLKLTETE 415
+ + G I++MK+FV+ +L+ + + L H+ ACE+I+ + + + F+ L TE
Sbjct: 310 AQYDRRRGMDIKQMKNFVSQELKGLKQEHRLLSLHIGACESIMKKKTKQDFQELIKTEHA 369
Query: 416 MLNNRNKKTNYNFLDENFGTEIHIYNSLRLMCLLSLTQ-GLSYDEYNTLVNKYLLAF 583
+L N + + ++++E+ ++ SLRLMCLLS+T+ GL +Y +L +YL ++
Sbjct: 370 LLEGFNIRESTSYIEEHIDRQVSPIESLRLMCLLSITENGLIPKDYRSLKTQYLQSY 426
>AF201694-1|AAF91174.1| 617|Homo sapiens vacuolar protein sorting
33B protein.
Length = 617
Score = 71.7 bits (168), Expect = 2e-12
Identities = 50/177 (28%), Positives = 96/177 (54%), Gaps = 5/177 (2%)
Frame = +2
Query: 68 VKDT-KVMKGKLNFDSEQSNESKSTAMPLDSSIDSLYAEI*HRHFXXXXXXXXXXXXXXX 244
V DT ++ G ++F E ++ KS + L++ D ++ EI + HF
Sbjct: 251 VDDTFRIKCGSVDFGPEVTSSDKSLKVLLNAE-DKVFNEIRNEHFSNVFGFLSQKARNLQ 309
Query: 245 NEDIKALG--IQEMKHFVATKLQQVTLFKQNLVNHVLACETIISEMSNR-FENLKLTETE 415
+ + G I++MK+FV+ +L+ + + L H+ ACE+I+ + + + F+ L TE
Sbjct: 310 AQYDRRRGMDIKQMKNFVSQELKGLKQEHRLLSLHIGACESIMKKKTKQDFQELIKTEHA 369
Query: 416 MLNNRNKKTNYNFLDENFGTEIHIYNSLRLMCLLSLTQ-GLSYDEYNTLVNKYLLAF 583
+L N + + ++++E+ ++ SLRLMCLLS+T+ GL +Y +L +YL ++
Sbjct: 370 LLEGFNIRESTSYIEEHIDRQVSPIESLRLMCLLSITENGLIPKDYRSLKTQYLQSY 426
>AK027754-1|BAB55345.1| 617|Homo sapiens protein ( Homo sapiens
cDNA FLJ14848 fis, clone PLACE1000492, highly similar to
Rat vacuolar protein sorting homolog r-vps33b mRNA. ).
Length = 617
Score = 69.3 bits (162), Expect = 9e-12
Identities = 49/177 (27%), Positives = 96/177 (54%), Gaps = 5/177 (2%)
Frame = +2
Query: 68 VKDT-KVMKGKLNFDSEQSNESKSTAMPLDSSIDSLYAEI*HRHFXXXXXXXXXXXXXXX 244
V DT ++ G ++F E ++ KS + L++ D ++ EI + +F
Sbjct: 251 VDDTFRIKCGSVDFGPEVTSSDKSLKVLLNAE-DKVFNEIRNEYFSNVFGFLSQKARNLQ 309
Query: 245 NEDIKALG--IQEMKHFVATKLQQVTLFKQNLVNHVLACETIISEMSNR-FENLKLTETE 415
+ + G I++MK+FV+ +L+ + + L H+ ACE+I+ + + + F+ L TE
Sbjct: 310 AQYDRRRGMDIKQMKNFVSQELKGLKQEHRLLSLHIGACESIMKKKTKQDFQELIKTEHA 369
Query: 416 MLNNRNKKTNYNFLDENFGTEIHIYNSLRLMCLLSLTQ-GLSYDEYNTLVNKYLLAF 583
+L N + + ++++E+ ++ SLRLMCLLS+T+ GL +Y +L +YL ++
Sbjct: 370 LLEGFNIRESTSYIEEHIDRQVSPIESLRLMCLLSITENGLIPKDYRSLKTQYLQSY 426
>L11573-1|AAB00076.1| 296|Homo sapiens 33.1 kDa protein protein.
Length = 296
Score = 31.5 bits (68), Expect = 2.3
Identities = 28/109 (25%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Frame = +2
Query: 245 NEDIKALGIQEMKHFVATKLQQVTLFKQNLVNHVLACETIISEMSNRFENLKLTETEMLN 424
NE+I L + ++ + T L+ VTL+ + ++H A I+ + + + + +T +L
Sbjct: 139 NENITGLA-RVLRGYAVTALEDVTLWHERDISHSSAERIILPDATTTLDYMLNRQTGILK 197
Query: 425 NRN---KKTNYNFLDENFGTEIHIYNSLRLMCLLSLTQGLSYDE-YNTL 559
N +K +N +D +G IY+ L+ L+ GLS ++ Y+T+
Sbjct: 198 NLGVFPEKMRHN-MDRTYGL---IYSQRLLLSLID--AGLSREQAYDTV 240
>BC073970-1|AAH73970.1| 855|Homo sapiens bicaudal D homolog 2
(Drosophila) protein.
Length = 855
Score = 31.1 bits (67), Expect = 3.0
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +2
Query: 269 IQEMKHFVATKLQQVTLFKQNLVNHVLACETIISEMSNRFENLKLTETE-MLNNRNK 436
I ++K ++TK +Q+T + L + E ++ + +++EN K TE M+ RN+
Sbjct: 676 ILKLKSLLSTKREQITTLRTVLKANKQTAEVALANLKSKYENEKAMVTETMMKLRNE 732
>BC004296-1|AAH04296.1| 586|Homo sapiens BICD2 protein protein.
Length = 586
Score = 31.1 bits (67), Expect = 3.0
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +2
Query: 269 IQEMKHFVATKLQQVTLFKQNLVNHVLACETIISEMSNRFENLKLTETE-MLNNRNK 436
I ++K ++TK +Q+T + L + E ++ + +++EN K TE M+ RN+
Sbjct: 438 ILKLKSLLSTKREQITTLRTVLKANKQTAEVALANLKSKYENEKAMVTETMMKLRNE 494
>AY052562-1|AAL12246.1| 824|Homo sapiens coiled-coil protein BICD2
protein.
Length = 824
Score = 31.1 bits (67), Expect = 3.0
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +2
Query: 269 IQEMKHFVATKLQQVTLFKQNLVNHVLACETIISEMSNRFENLKLTETE-MLNNRNK 436
I ++K ++TK +Q+T + L + E ++ + +++EN K TE M+ RN+
Sbjct: 676 ILKLKSLLSTKREQITTLRTVLKANKQTAEVALANLKSKYENEKAMVTETMMKLRNE 732
>AL137074-4|CAI14370.1| 855|Homo sapiens bicaudal D homolog 2
(Drosophila) protein.
Length = 855
Score = 31.1 bits (67), Expect = 3.0
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +2
Query: 269 IQEMKHFVATKLQQVTLFKQNLVNHVLACETIISEMSNRFENLKLTETE-MLNNRNK 436
I ++K ++TK +Q+T + L + E ++ + +++EN K TE M+ RN+
Sbjct: 676 ILKLKSLLSTKREQITTLRTVLKANKQTAEVALANLKSKYENEKAMVTETMMKLRNE 732
>AL137074-3|CAI14369.1| 824|Homo sapiens bicaudal D homolog 2
(Drosophila) protein.
Length = 824
Score = 31.1 bits (67), Expect = 3.0
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +2
Query: 269 IQEMKHFVATKLQQVTLFKQNLVNHVLACETIISEMSNRFENLKLTETE-MLNNRNK 436
I ++K ++TK +Q+T + L + E ++ + +++EN K TE M+ RN+
Sbjct: 676 ILKLKSLLSTKREQITTLRTVLKANKQTAEVALANLKSKYENEKAMVTETMMKLRNE 732
>AL136981-2|CAI41014.1| 855|Homo sapiens bicaudal D homolog 2
(Drosophila) protein.
Length = 855
Score = 31.1 bits (67), Expect = 3.0
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +2
Query: 269 IQEMKHFVATKLQQVTLFKQNLVNHVLACETIISEMSNRFENLKLTETE-MLNNRNK 436
I ++K ++TK +Q+T + L + E ++ + +++EN K TE M+ RN+
Sbjct: 676 ILKLKSLLSTKREQITTLRTVLKANKQTAEVALANLKSKYENEKAMVTETMMKLRNE 732
>AL136981-1|CAI41013.1| 824|Homo sapiens bicaudal D homolog 2
(Drosophila) protein.
Length = 824
Score = 31.1 bits (67), Expect = 3.0
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +2
Query: 269 IQEMKHFVATKLQQVTLFKQNLVNHVLACETIISEMSNRFENLKLTETE-MLNNRNK 436
I ++K ++TK +Q+T + L + E ++ + +++EN K TE M+ RN+
Sbjct: 676 ILKLKSLLSTKREQITTLRTVLKANKQTAEVALANLKSKYENEKAMVTETMMKLRNE 732
>AB014599-1|BAA31674.1| 847|Homo sapiens KIAA0699 protein protein.
Length = 847
Score = 31.1 bits (67), Expect = 3.0
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +2
Query: 269 IQEMKHFVATKLQQVTLFKQNLVNHVLACETIISEMSNRFENLKLTETE-MLNNRNK 436
I ++K ++TK +Q+T + L + E ++ + +++EN K TE M+ RN+
Sbjct: 668 ILKLKSLLSTKREQITTLRTVLKANKQTAEVALANLKSKYENEKAMVTETMMKLRNE 724
>L13744-1|AAA58361.1| 568|Homo sapiens AF-9 protein.
Length = 568
Score = 30.3 bits (65), Expect = 5.2
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 41 INCGFLDLNVKDTKVMK-GKLNFDSEQSNESKSTAMPLDSSID 166
+ C +KD +K GK+ +SE S + KST P D +D
Sbjct: 318 LTCSADKKQIKDKSHVKMGKVKIESETSEKKKSTLPPFDDIVD 360
>D16688-1|BAA04090.1| 342|Homo sapiens LTG9/MLLT3 protein protein.
Length = 342
Score = 30.3 bits (65), Expect = 5.2
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 41 INCGFLDLNVKDTKVMK-GKLNFDSEQSNESKSTAMPLDSSID 166
+ C +KD +K GK+ +SE S + KST P D +D
Sbjct: 92 LTCSADKKQIKDKSHVKMGKVKIESETSEKKKSTLPPFDDIVD 134
>BC036089-1|AAH36089.1| 568|Homo sapiens myeloid/lymphoid or
mixed-lineage leukemia (trithorax homolog, Drosophila);
tra protein.
Length = 568
Score = 30.3 bits (65), Expect = 5.2
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 41 INCGFLDLNVKDTKVMK-GKLNFDSEQSNESKSTAMPLDSSID 166
+ C +KD +K GK+ +SE S + KST P D +D
Sbjct: 318 LTCSADKKQIKDKSHVKMGKVKIESETSEKKKSTLPPFDDIVD 360
>AL512635-1|CAH70705.1| 568|Homo sapiens myeloid/lymphoid or
mixed-lineage leukemia (trithorax homolog, Drosophila);
tra protein.
Length = 568
Score = 30.3 bits (65), Expect = 5.2
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 41 INCGFLDLNVKDTKVMK-GKLNFDSEQSNESKSTAMPLDSSID 166
+ C +KD +K GK+ +SE S + KST P D +D
Sbjct: 318 LTCSADKKQIKDKSHVKMGKVKIESETSEKKKSTLPPFDDIVD 360
>AL354879-1|CAI14771.1| 568|Homo sapiens myeloid/lymphoid or
mixed-lineage leukemia (trithorax homolog, Drosophila);
tra protein.
Length = 568
Score = 30.3 bits (65), Expect = 5.2
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 41 INCGFLDLNVKDTKVMK-GKLNFDSEQSNESKSTAMPLDSSID 166
+ C +KD +K GK+ +SE S + KST P D +D
Sbjct: 318 LTCSADKKQIKDKSHVKMGKVKIESETSEKKKSTLPPFDDIVD 360
>BC039821-1|AAH39821.1| 478|Homo sapiens disrupted in renal
carcinoma 2 protein.
Length = 478
Score = 29.9 bits (64), Expect = 6.9
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -1
Query: 384 LLLISDIIVSQANTWFTRFCLKRVTCWSLVATKCFISCI 268
LLL S +S +TWFT CL +T L + SCI
Sbjct: 351 LLLFSGATLS--STWFTLTCLNSITHLPLTTVTLYASCI 387
>AK027690-1|BAB55300.1| 478|Homo sapiens protein ( Homo sapiens
cDNA FLJ14784 fis, clone NT2RP4000713. ).
Length = 478
Score = 29.9 bits (64), Expect = 6.9
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -1
Query: 384 LLLISDIIVSQANTWFTRFCLKRVTCWSLVATKCFISCI 268
LLL S +S +TWFT CL +T L + SCI
Sbjct: 351 LLLFSGATLS--STWFTLTCLNSITHLPLTTVTLYASCI 387
>BC113524-1|AAI13525.1| 578|Homo sapiens IFT74 protein protein.
Length = 578
Score = 29.5 bits (63), Expect = 9.1
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 71 KDTKVMKGKLNFDSEQSNESKSTAMPLDSSIDSLYAEI 184
++ K+M+ LNF S + +S+STA L S I L ++
Sbjct: 394 QELKMMQDDLNFKSTEVQKSQSTAQNLTSDIQRLQLDL 431
>BC023634-1|AAH23634.2| 383|Homo sapiens IFT74 protein protein.
Length = 383
Score = 29.5 bits (63), Expect = 9.1
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 71 KDTKVMKGKLNFDSEQSNESKSTAMPLDSSIDSLYAEI 184
++ K+M+ LNF S + +S+STA L S I L ++
Sbjct: 296 QELKMMQDDLNFKSTEVQKSQSTAQNLTSDIQRLQLDL 333
>AY040325-1|AAK77221.1| 600|Homo sapiens capillary morphogenesis
protein-1 protein.
Length = 600
Score = 29.5 bits (63), Expect = 9.1
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 71 KDTKVMKGKLNFDSEQSNESKSTAMPLDSSIDSLYAEI 184
++ K+M+ LNF S + +S+STA L S I L ++
Sbjct: 416 QELKMMQDDLNFKSTEVQKSQSTAQNLTSDIQRLQLDL 453
>AL356133-4|CAH72643.1| 600|Homo sapiens intraflagellar transport
74 homolog (Chlamydomonas) protein.
Length = 600
Score = 29.5 bits (63), Expect = 9.1
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 71 KDTKVMKGKLNFDSEQSNESKSTAMPLDSSIDSLYAEI 184
++ K+M+ LNF S + +S+STA L S I L ++
Sbjct: 416 QELKMMQDDLNFKSTEVQKSQSTAQNLTSDIQRLQLDL 453
>AK026274-1|BAB15423.1| 310|Homo sapiens protein ( Homo sapiens
cDNA: FLJ22621 fis, clone HSI05658. ).
Length = 310
Score = 29.5 bits (63), Expect = 9.1
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 71 KDTKVMKGKLNFDSEQSNESKSTAMPLDSSIDSLYAEI 184
++ K+M+ LNF S + +S+STA L S I L ++
Sbjct: 126 QELKMMQDDLNFKSTEVQKSQSTAQNLTSDIQRLQLDL 163
>AK023707-1|BAB14650.1| 435|Homo sapiens protein ( Homo sapiens
cDNA FLJ13645 fis, clone PLACE1011310, weakly similar to
MYOSIN HEAVY CHAIN, GIZZARD SMOOTH MUSCLE. ).
Length = 435
Score = 29.5 bits (63), Expect = 9.1
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 71 KDTKVMKGKLNFDSEQSNESKSTAMPLDSSIDSLYAEI 184
++ K+M+ LNF S + +S+STA L S I L ++
Sbjct: 251 QELKMMQDDLNFKSTEVQKSQSTAQNLTSDIQRLQLDL 288
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,594,715
Number of Sequences: 237096
Number of extensions: 1120676
Number of successful extensions: 2887
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 2791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2882
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6098631048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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