Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30019
         (576 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070665-1|AAL48136.1|  123|Drosophila melanogaster RH04612p pro...   132   2e-31
M21045-2|AAA28853.1|  151|Drosophila melanogaster protein ( D.me...   122   3e-28
M21045-1|AAA28852.1|  151|Drosophila melanogaster protein ( D.me...   122   3e-28
AY071321-1|AAL48943.1|  151|Drosophila melanogaster RE34379p pro...   122   3e-28
AE014298-1091|AAF46299.1|  151|Drosophila melanogaster CG1527-PA...   122   3e-28
AE014298-1090|AAF46297.1|  151|Drosophila melanogaster CG1524-PB...   122   3e-28
AE014298-1089|AAF46298.1|  151|Drosophila melanogaster CG1524-PA...   122   3e-28

>AY070665-1|AAL48136.1|  123|Drosophila melanogaster RH04612p
           protein.
          Length = 123

 Score =  132 bits (320), Expect = 2e-31
 Identities = 72/107 (67%), Positives = 77/107 (71%)
 Frame = +3

Query: 54  MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 233
           MAPRK KV KEEVQV LGPQ   GE VFGVAHI+ASFNDTFVHVTDLSGRETIARVTGGM
Sbjct: 1   MAPRKAKVQKEEVQVQLGPQVRDGEIVFGVAHIYASFNDTFVHVTDLSGRETIARVTGGM 60

Query: 234 KVKADRDKRHPTLLCWRHRM*QRNAKLLA*RPCT*SSVLLVETKQRP 374
           KVKADRD+  P       RM  R+A+  A  PC  S V    T+ RP
Sbjct: 61  KVKADRDEASPYAAMSPLRMWLRSARHWALLPCILSCVPPAATRPRP 107


>M21045-2|AAA28853.1|  151|Drosophila melanogaster protein (
           D.melanogaster ribosomalprotein S14 A and B genes,
           complete cds. ).
          Length = 151

 Score =  122 bits (295), Expect = 3e-28
 Identities = 60/71 (84%), Positives = 62/71 (87%)
 Frame = +3

Query: 54  MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 233
           MAPRK KV KEEVQV LGPQ   GE VFGVAHI+ASFNDTFVHVTDLSGRETIARVTGGM
Sbjct: 1   MAPRKAKVQKEEVQVQLGPQVRDGEIVFGVAHIYASFNDTFVHVTDLSGRETIARVTGGM 60

Query: 234 KVKADRDKRHP 266
           KVKADRD+  P
Sbjct: 61  KVKADRDEASP 71



 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 41/65 (63%), Positives = 43/65 (66%)
 Frame = +2

Query: 287 QDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSD 466
           QDVAEKCKTLGITALHIKLRA            AQ          MKIGRIEDVTP+PSD
Sbjct: 79  QDVAEKCKTLGITALHIKLRATGGNKTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSD 138

Query: 467 STRRR 481
           STRR+
Sbjct: 139 STRRK 143


>M21045-1|AAA28852.1|  151|Drosophila melanogaster protein (
           D.melanogaster ribosomalprotein S14 A and B genes,
           complete cds. ).
          Length = 151

 Score =  122 bits (295), Expect = 3e-28
 Identities = 60/71 (84%), Positives = 62/71 (87%)
 Frame = +3

Query: 54  MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 233
           MAPRK KV KEEVQV LGPQ   GE VFGVAHI+ASFNDTFVHVTDLSGRETIARVTGGM
Sbjct: 1   MAPRKAKVQKEEVQVQLGPQVRDGEIVFGVAHIYASFNDTFVHVTDLSGRETIARVTGGM 60

Query: 234 KVKADRDKRHP 266
           KVKADRD+  P
Sbjct: 61  KVKADRDEASP 71



 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 41/65 (63%), Positives = 43/65 (66%)
 Frame = +2

Query: 287 QDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSD 466
           QDVAEKCKTLGITALHIKLRA            AQ          MKIGRIEDVTP+PSD
Sbjct: 79  QDVAEKCKTLGITALHIKLRATGGNKTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSD 138

Query: 467 STRRR 481
           STRR+
Sbjct: 139 STRRK 143


>AY071321-1|AAL48943.1|  151|Drosophila melanogaster RE34379p
           protein.
          Length = 151

 Score =  122 bits (295), Expect = 3e-28
 Identities = 60/71 (84%), Positives = 62/71 (87%)
 Frame = +3

Query: 54  MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 233
           MAPRK KV KEEVQV LGPQ   GE VFGVAHI+ASFNDTFVHVTDLSGRETIARVTGGM
Sbjct: 1   MAPRKAKVQKEEVQVQLGPQVRDGEIVFGVAHIYASFNDTFVHVTDLSGRETIARVTGGM 60

Query: 234 KVKADRDKRHP 266
           KVKADRD+  P
Sbjct: 61  KVKADRDEASP 71



 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 41/65 (63%), Positives = 43/65 (66%)
 Frame = +2

Query: 287 QDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSD 466
           QDVAEKCKTLGITALHIKLRA            AQ          MKIGRIEDVTP+PSD
Sbjct: 79  QDVAEKCKTLGITALHIKLRATGGNKTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSD 138

Query: 467 STRRR 481
           STRR+
Sbjct: 139 STRRK 143


>AE014298-1091|AAF46299.1|  151|Drosophila melanogaster CG1527-PA
           protein.
          Length = 151

 Score =  122 bits (295), Expect = 3e-28
 Identities = 60/71 (84%), Positives = 62/71 (87%)
 Frame = +3

Query: 54  MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 233
           MAPRK KV KEEVQV LGPQ   GE VFGVAHI+ASFNDTFVHVTDLSGRETIARVTGGM
Sbjct: 1   MAPRKAKVQKEEVQVQLGPQVRDGEIVFGVAHIYASFNDTFVHVTDLSGRETIARVTGGM 60

Query: 234 KVKADRDKRHP 266
           KVKADRD+  P
Sbjct: 61  KVKADRDEASP 71



 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 41/65 (63%), Positives = 43/65 (66%)
 Frame = +2

Query: 287 QDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSD 466
           QDVAEKCKTLGITALHIKLRA            AQ          MKIGRIEDVTP+PSD
Sbjct: 79  QDVAEKCKTLGITALHIKLRATGGNKTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSD 138

Query: 467 STRRR 481
           STRR+
Sbjct: 139 STRRK 143


>AE014298-1090|AAF46297.1|  151|Drosophila melanogaster CG1524-PB,
           isoform B protein.
          Length = 151

 Score =  122 bits (295), Expect = 3e-28
 Identities = 60/71 (84%), Positives = 62/71 (87%)
 Frame = +3

Query: 54  MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 233
           MAPRK KV KEEVQV LGPQ   GE VFGVAHI+ASFNDTFVHVTDLSGRETIARVTGGM
Sbjct: 1   MAPRKAKVQKEEVQVQLGPQVRDGEIVFGVAHIYASFNDTFVHVTDLSGRETIARVTGGM 60

Query: 234 KVKADRDKRHP 266
           KVKADRD+  P
Sbjct: 61  KVKADRDEASP 71



 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 41/65 (63%), Positives = 43/65 (66%)
 Frame = +2

Query: 287 QDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSD 466
           QDVAEKCKTLGITALHIKLRA            AQ          MKIGRIEDVTP+PSD
Sbjct: 79  QDVAEKCKTLGITALHIKLRATGGNKTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSD 138

Query: 467 STRRR 481
           STRR+
Sbjct: 139 STRRK 143


>AE014298-1089|AAF46298.1|  151|Drosophila melanogaster CG1524-PA,
           isoform A protein.
          Length = 151

 Score =  122 bits (295), Expect = 3e-28
 Identities = 60/71 (84%), Positives = 62/71 (87%)
 Frame = +3

Query: 54  MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 233
           MAPRK KV KEEVQV LGPQ   GE VFGVAHI+ASFNDTFVHVTDLSGRETIARVTGGM
Sbjct: 1   MAPRKAKVQKEEVQVQLGPQVRDGEIVFGVAHIYASFNDTFVHVTDLSGRETIARVTGGM 60

Query: 234 KVKADRDKRHP 266
           KVKADRD+  P
Sbjct: 61  KVKADRDEASP 71



 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 41/65 (63%), Positives = 43/65 (66%)
 Frame = +2

Query: 287 QDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSD 466
           QDVAEKCKTLGITALHIKLRA            AQ          MKIGRIEDVTP+PSD
Sbjct: 79  QDVAEKCKTLGITALHIKLRATGGNKTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSD 138

Query: 467 STRRR 481
           STRR+
Sbjct: 139 STRRK 143


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,093,771
Number of Sequences: 53049
Number of extensions: 535045
Number of successful extensions: 1383
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1383
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2276053890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)