Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30261.Seq
(510 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X99665-1|CAA67979.1| 106|Drosophila melanogaster mitochondrial ... 57 1e-08
BT001763-1|AAN71518.1| 106|Drosophila melanogaster RH08870p pro... 57 1e-08
AE014297-3317|AAF56127.1| 106|Drosophila melanogaster CG4412-PA... 57 1e-08
BT023609-1|AAY85009.1| 159|Drosophila melanogaster IP06415p pro... 42 5e-04
AE014296-920|AAF47954.1| 147|Drosophila melanogaster CG12027-PA... 42 5e-04
AE014297-287|AAF52000.1| 198|Drosophila melanogaster CG2948-PA ... 28 6.4
AB115908-1|BAC82838.1| 198|Drosophila melanogaster MAD2 like pr... 28 6.4
>X99665-1|CAA67979.1| 106|Drosophila melanogaster mitochondrial
ATPase couplingfactor 6 subunit protein.
Length = 106
Score = 57.2 bits (132), Expect = 1e-08
Identities = 30/53 (56%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Frame = -2
Query: 407 SKLVGLRAATTSMMVSRNLAAA--QKATDPIQQLFLDKIREYKQKSAGGKVPD 255
S L G+R T + + A KA+DPIQQLFLDK+REYKQKSAGGK+ D
Sbjct: 5 SLLSGMRVLRTEARRNFGIVAPALNKASDPIQQLFLDKVREYKQKSAGGKLVD 57
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 201 QYGGGPGIDMTAFPSLKFEEPKLDPIDE 118
Q+G DM FP +F + K+DPI +
Sbjct: 76 QFGSDGKTDMLKFPEFQFPDVKVDPITQ 103
>BT001763-1|AAN71518.1| 106|Drosophila melanogaster RH08870p
protein.
Length = 106
Score = 57.2 bits (132), Expect = 1e-08
Identities = 30/53 (56%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Frame = -2
Query: 407 SKLVGLRAATTSMMVSRNLAAA--QKATDPIQQLFLDKIREYKQKSAGGKVPD 255
S L G+R T + + A KA+DPIQQLFLDK+REYKQKSAGGK+ D
Sbjct: 5 SLLSGMRVLRTEARRNFGIVAPALNKASDPIQQLFLDKVREYKQKSAGGKLVD 57
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 201 QYGGGPGIDMTAFPSLKFEEPKLDPIDE 118
Q+G DM FP +F + K+DPI +
Sbjct: 76 QFGSDGKTDMLKFPEFQFPDVKVDPITQ 103
>AE014297-3317|AAF56127.1| 106|Drosophila melanogaster CG4412-PA
protein.
Length = 106
Score = 57.2 bits (132), Expect = 1e-08
Identities = 30/53 (56%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Frame = -2
Query: 407 SKLVGLRAATTSMMVSRNLAAA--QKATDPIQQLFLDKIREYKQKSAGGKVPD 255
S L G+R T + + A KA+DPIQQLFLDK+REYKQKSAGGK+ D
Sbjct: 5 SLLSGMRVLRTEARRNFGIVAPALNKASDPIQQLFLDKVREYKQKSAGGKLVD 57
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 201 QYGGGPGIDMTAFPSLKFEEPKLDPIDE 118
Q+G DM FP +F + K+DPI +
Sbjct: 76 QFGSDGKTDMLKFPEFQFPDVKVDPITQ 103
>BT023609-1|AAY85009.1| 159|Drosophila melanogaster IP06415p
protein.
Length = 159
Score = 41.9 bits (94), Expect = 5e-04
Identities = 20/43 (46%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Frame = -2
Query: 374 SMMVSRNLA--AAQKATDPIQQLFLDKIREYKQKSAGGKVPDP 252
S+++ R+++ A+ + DPI Q+FLDK+REY+ KS GK DP
Sbjct: 21 SLVLCRSVSNTASLRYKDPIYQIFLDKVREYRLKSPKGKPVDP 63
Score = 37.9 bits (84), Expect = 0.008
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -1
Query: 201 QYGGGPGIDMTAFPSLKFEEPKLDPIDEQAAPK 103
QYGGG G+DM FP K + +DPI P+
Sbjct: 81 QYGGGEGVDMLEFPKFKLPDIDIDPISVDDLPE 113
>AE014296-920|AAF47954.1| 147|Drosophila melanogaster CG12027-PA
protein.
Length = 147
Score = 41.9 bits (94), Expect = 5e-04
Identities = 20/43 (46%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Frame = -2
Query: 374 SMMVSRNLA--AAQKATDPIQQLFLDKIREYKQKSAGGKVPDP 252
S+++ R+++ A+ + DPI Q+FLDK+REY+ KS GK DP
Sbjct: 9 SLVLCRSVSNTASLRYKDPIYQIFLDKVREYRLKSPKGKPVDP 51
Score = 37.9 bits (84), Expect = 0.008
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -1
Query: 201 QYGGGPGIDMTAFPSLKFEEPKLDPIDEQAAPK 103
QYGGG G+DM FP K + +DPI P+
Sbjct: 69 QYGGGEGVDMLEFPKFKLPDIDIDPISVDDLPE 101
>AE014297-287|AAF52000.1| 198|Drosophila melanogaster CG2948-PA
protein.
Length = 198
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 171 SCRFRDPLHTASQAFLIQFSALSRQQGWIW 260
SC+F+ LHT +AF I+FS S+ Q + W
Sbjct: 134 SCQFKVHLHTTQEAF-IRFSHDSQYQEFPW 162
>AB115908-1|BAC82838.1| 198|Drosophila melanogaster MAD2 like
protein protein.
Length = 198
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 171 SCRFRDPLHTASQAFLIQFSALSRQQGWIW 260
SC+F+ LHT +AF I+FS S+ Q + W
Sbjct: 134 SCQFKVHLHTTQEAF-IRFSHDSQYQEFPW 162
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,872,844
Number of Sequences: 53049
Number of extensions: 413897
Number of successful extensions: 670
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1846255872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -