Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30083
         (590 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml prot...   313   1e-85
U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal prot...   313   1e-85
U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal prot...   313   1e-85
AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p pro...   313   1e-85
AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA...   313   1e-85
AF158179-1|AAD48780.1| 1711|Drosophila melanogaster Chiffon-2 pr...    29   6.2  
AF158178-1|AAD48779.1| 1695|Drosophila melanogaster Chiffon prot...    29   6.2  
AE014134-2711|AAG22437.1| 1695|Drosophila melanogaster CG5813-PB...    29   6.2  
AE014134-2710|AAF53530.1| 1711|Drosophila melanogaster CG5813-PA...    29   6.2  

>X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml protein
           S2 protein.
          Length = 267

 Score =  313 bits (768), Expect = 1e-85
 Identities = 148/157 (94%), Positives = 151/157 (96%)
 Frame = +3

Query: 120 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 299
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 300 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 479
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156

Query: 480 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVP 590
           IGKPHTVPCKVTGKCGSV+VRLIPAPRGTGIVSAPVP
Sbjct: 157 IGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVP 193


>U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  313 bits (768), Expect = 1e-85
 Identities = 148/157 (94%), Positives = 151/157 (96%)
 Frame = +3

Query: 120 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 299
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 300 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 479
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156

Query: 480 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVP 590
           IGKPHTVPCKVTGKCGSV+VRLIPAPRGTGIVSAPVP
Sbjct: 157 IGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVP 193


>U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  313 bits (768), Expect = 1e-85
 Identities = 148/157 (94%), Positives = 151/157 (96%)
 Frame = +3

Query: 120 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 299
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 300 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 479
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156

Query: 480 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVP 590
           IGKPHTVPCKVTGKCGSV+VRLIPAPRGTGIVSAPVP
Sbjct: 157 IGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVP 193


>AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p
           protein.
          Length = 267

 Score =  313 bits (768), Expect = 1e-85
 Identities = 148/157 (94%), Positives = 151/157 (96%)
 Frame = +3

Query: 120 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 299
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 300 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 479
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156

Query: 480 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVP 590
           IGKPHTVPCKVTGKCGSV+VRLIPAPRGTGIVSAPVP
Sbjct: 157 IGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVP 193


>AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA
           protein.
          Length = 267

 Score =  313 bits (768), Expect = 1e-85
 Identities = 148/157 (94%), Positives = 151/157 (96%)
 Frame = +3

Query: 120 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 299
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 300 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 479
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156

Query: 480 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVP 590
           IGKPHTVPCKVTGKCGSV+VRLIPAPRGTGIVSAPVP
Sbjct: 157 IGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVP 193


>AF158179-1|AAD48780.1| 1711|Drosophila melanogaster Chiffon-2
            protein.
          Length = 1711

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 394  RKSPLPFEALLSLLSCLFYQFEEVTGVTRSESHTP 498
            RKSP    + L+L+SC+  Q ++    T SE+  P
Sbjct: 1036 RKSPREHASTLALVSCIIRQRQDSQSKTNSEAEEP 1070


>AF158178-1|AAD48779.1| 1695|Drosophila melanogaster Chiffon protein.
          Length = 1695

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 394  RKSPLPFEALLSLLSCLFYQFEEVTGVTRSESHTP 498
            RKSP    + L+L+SC+  Q ++    T SE+  P
Sbjct: 1036 RKSPREHASTLALVSCIIRQRQDSQSKTNSEAEEP 1070


>AE014134-2711|AAG22437.1| 1695|Drosophila melanogaster CG5813-PB,
            isoform B protein.
          Length = 1695

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 394  RKSPLPFEALLSLLSCLFYQFEEVTGVTRSESHTP 498
            RKSP    + L+L+SC+  Q ++    T SE+  P
Sbjct: 1036 RKSPREHASTLALVSCIIRQRQDSQSKTNSEAEEP 1070


>AE014134-2710|AAF53530.1| 1711|Drosophila melanogaster CG5813-PA,
            isoform A protein.
          Length = 1711

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 394  RKSPLPFEALLSLLSCLFYQFEEVTGVTRSESHTP 498
            RKSP    + L+L+SC+  Q ++    T SE+  P
Sbjct: 1036 RKSPREHASTLALVSCIIRQRQDSQSKTNSEAEEP 1070


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,941,964
Number of Sequences: 53049
Number of extensions: 626015
Number of successful extensions: 2927
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2916
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2379510885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)