Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10a17f
(539 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L22959-1|AAA28870.1| 152|Drosophila melanogaster ribosomal prot... 260 1e-69
BT024929-1|ABE01159.1| 152|Drosophila melanogaster IP16603p pro... 260 1e-69
AE013599-2985|AAM68401.1| 152|Drosophila melanogaster CG8900-PB... 260 1e-69
AE013599-2984|AAF57491.1| 152|Drosophila melanogaster CG8900-PA... 260 1e-69
AY118434-1|AAM48463.1| 152|Drosophila melanogaster RH43343p pro... 256 1e-68
BT022499-1|AAY54915.1| 246|Drosophila melanogaster IP07925p pro... 92 4e-19
BT016037-1|AAV36922.1| 447|Drosophila melanogaster LP23579p pro... 28 9.4
AY069030-1|AAL39175.1| 433|Drosophila melanogaster GH01429p pro... 28 9.4
AE014298-2418|AAF48619.1| 454|Drosophila melanogaster CG9903-PA... 28 9.4
AE014297-2410|AAF55469.1| 433|Drosophila melanogaster CG7379-PA... 28 9.4
>L22959-1|AAA28870.1| 152|Drosophila melanogaster ribosomal protein
S18 protein.
Length = 152
Score = 260 bits (636), Expect = 1e-69
Identities = 118/135 (87%), Positives = 130/135 (96%)
Frame = +2
Query: 56 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 235
MSLVIP+KFQHILRIMNTNIDGKRKV AMTAIKGVGRRYSNIVLKKAD+DL KRAGECT
Sbjct: 1 MSLVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECT 60
Query: 236 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 415
EEEV+K++TI+SNP QYK+P+WFLNRQKDI+DGKY QLTSSNLDSKLR+DLERLKKIR+H
Sbjct: 61 EEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSH 120
Query: 416 RGMRHYWGLRVRGQH 460
RG+RHYWGLRVRGQH
Sbjct: 121 RGLRHYWGLRVRGQH 135
>BT024929-1|ABE01159.1| 152|Drosophila melanogaster IP16603p
protein.
Length = 152
Score = 260 bits (636), Expect = 1e-69
Identities = 118/135 (87%), Positives = 130/135 (96%)
Frame = +2
Query: 56 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 235
MSLVIP+KFQHILRIMNTNIDGKRKV AMTAIKGVGRRYSNIVLKKAD+DL KRAGECT
Sbjct: 1 MSLVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECT 60
Query: 236 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 415
EEEV+K++TI+SNP QYK+P+WFLNRQKDI+DGKY QLTSSNLDSKLR+DLERLKKIR+H
Sbjct: 61 EEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSH 120
Query: 416 RGMRHYWGLRVRGQH 460
RG+RHYWGLRVRGQH
Sbjct: 121 RGLRHYWGLRVRGQH 135
>AE013599-2985|AAM68401.1| 152|Drosophila melanogaster CG8900-PB,
isoform B protein.
Length = 152
Score = 260 bits (636), Expect = 1e-69
Identities = 118/135 (87%), Positives = 130/135 (96%)
Frame = +2
Query: 56 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 235
MSLVIP+KFQHILRIMNTNIDGKRKV AMTAIKGVGRRYSNIVLKKAD+DL KRAGECT
Sbjct: 1 MSLVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECT 60
Query: 236 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 415
EEEV+K++TI+SNP QYK+P+WFLNRQKDI+DGKY QLTSSNLDSKLR+DLERLKKIR+H
Sbjct: 61 EEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSH 120
Query: 416 RGMRHYWGLRVRGQH 460
RG+RHYWGLRVRGQH
Sbjct: 121 RGLRHYWGLRVRGQH 135
>AE013599-2984|AAF57491.1| 152|Drosophila melanogaster CG8900-PA,
isoform A protein.
Length = 152
Score = 260 bits (636), Expect = 1e-69
Identities = 118/135 (87%), Positives = 130/135 (96%)
Frame = +2
Query: 56 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 235
MSLVIP+KFQHILRIMNTNIDGKRKV AMTAIKGVGRRYSNIVLKKAD+DL KRAGECT
Sbjct: 1 MSLVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECT 60
Query: 236 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 415
EEEV+K++TI+SNP QYK+P+WFLNRQKDI+DGKY QLTSSNLDSKLR+DLERLKKIR+H
Sbjct: 61 EEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSH 120
Query: 416 RGMRHYWGLRVRGQH 460
RG+RHYWGLRVRGQH
Sbjct: 121 RGLRHYWGLRVRGQH 135
>AY118434-1|AAM48463.1| 152|Drosophila melanogaster RH43343p
protein.
Length = 152
Score = 256 bits (628), Expect = 1e-68
Identities = 117/135 (86%), Positives = 129/135 (95%)
Frame = +2
Query: 56 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 235
MSLVIP+KFQ ILRIMNTNIDGKRKV AMTAIKGVGRRYSNIVLKKAD+DL KRAGECT
Sbjct: 1 MSLVIPEKFQRILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECT 60
Query: 236 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 415
EEEV+K++TI+SNP QYK+P+WFLNRQKDI+DGKY QLTSSNLDSKLR+DLERLKKIR+H
Sbjct: 61 EEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSH 120
Query: 416 RGMRHYWGLRVRGQH 460
RG+RHYWGLRVRGQH
Sbjct: 121 RGLRHYWGLRVRGQH 135
>BT022499-1|AAY54915.1| 246|Drosophila melanogaster IP07925p
protein.
Length = 246
Score = 92.3 bits (219), Expect = 4e-19
Identities = 40/48 (83%), Positives = 46/48 (95%)
Frame = +2
Query: 152 IKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIP 295
IKGVGRRYSNIVLKKAD+DL KRAGECTEEEV+K++TI+SNP QYK+P
Sbjct: 1 IKGVGRRYSNIVLKKADVDLTKRAGECTEEEVDKVVTIISNPLQYKVP 48
>BT016037-1|AAV36922.1| 447|Drosophila melanogaster LP23579p
protein.
Length = 447
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 346 LAVFTINNILLPI*EPVWYLILPRIRHDSD 257
+A TIN++L P+W L+L RI ++ D
Sbjct: 237 VATTTINSLLALALLPIWILVLGRILYEDD 266
>AY069030-1|AAL39175.1| 433|Drosophila melanogaster GH01429p
protein.
Length = 433
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 305 LNRQKDIVDGKYSQLTSSNLDSKLREDLER 394
+N ++I+DGK QL + + L+ED +R
Sbjct: 97 VNHMQEIIDGKLRQLDTDQQNLDLKEDRDR 126
>AE014298-2418|AAF48619.1| 454|Drosophila melanogaster CG9903-PA
protein.
Length = 454
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 346 LAVFTINNILLPI*EPVWYLILPRIRHDSD 257
+A TIN++L P+W L+L RI ++ D
Sbjct: 244 VATTTINSLLALALLPIWILVLGRILYEDD 273
>AE014297-2410|AAF55469.1| 433|Drosophila melanogaster CG7379-PA
protein.
Length = 433
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 305 LNRQKDIVDGKYSQLTSSNLDSKLREDLER 394
+N ++I+DGK QL + + L+ED +R
Sbjct: 97 VNHMQEIIDGKLRQLDTDQQNLDLKEDRDR 126
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,305,921
Number of Sequences: 53049
Number of extensions: 513479
Number of successful extensions: 1432
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1432
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 2053700352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -