Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40069
(752 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p... 70 2e-12
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr... 70 2e-12
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue... 70 2e-12
AL110487-1|CAB54424.1| 610|Caenorhabditis elegans Hypothetical ... 32 0.38
AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical ... 31 1.2
Z69787-3|CAA93638.2| 537|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical pr... 30 2.0
L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome cond... 30 2.0
U40424-5|AAA81461.2| 638|Caenorhabditis elegans Hypothetical pr... 29 2.7
EF472000-1|ABQ96385.1| 1142|Caenorhabditis elegans SMG-3 protein. 29 3.5
AC084197-22|AAK68590.2| 1142|Caenorhabditis elegans Suppressor w... 29 3.5
Z93390-7|CAB07677.1| 931|Caenorhabditis elegans Hypothetical pr... 29 4.7
AL032675-2|CAA21780.1| 931|Caenorhabditis elegans Hypothetical ... 29 4.7
Z70268-5|CAJ85767.2| 1204|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z70268-4|CAA94220.3| 1263|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z70268-3|CAA94219.3| 1263|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical p... 28 6.2
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical... 28 6.2
AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transport... 28 8.2
AC090999-11|ABD63207.1| 356|Caenorhabditis elegans Hypothetical... 28 8.2
AC006607-5|AAF60371.2| 640|Caenorhabditis elegans Hypothetical ... 28 8.2
>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
protein T04H1.4b protein.
Length = 1312
Score = 69.7 bits (163), Expect = 2e-12
Identities = 38/72 (52%), Positives = 43/72 (59%)
Frame = +3
Query: 36 MAGVKSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPG 215
MA L IRGIRS G ED D +I F SP TLI G NG GKTT IE L + TGQMP
Sbjct: 15 MAKFLRLHIRGIRSVGDEDHDVHKIDFLSPCTLISGPNGTGKTTTIEALNFVTTGQMPT- 73
Query: 216 SRNECFVHDAKV 251
+ + F+H V
Sbjct: 74 QKKQNFIHSTDV 85
Score = 60.9 bits (141), Expect = 9e-10
Identities = 25/56 (44%), Positives = 38/56 (67%)
Frame = +1
Query: 493 KFCRICHQEDSSWPLDEGKKVKERFDEIFDADKYSDCLDRLKKIRKDYAQNLKLLE 660
K+ CHQEDS+WPL E K++K+RFD+IF K+ +R+KKI D+ + ++ E
Sbjct: 165 KYVIFCHQEDSTWPLSEPKELKKRFDDIFQLTKFVKAQERMKKIVLDFKKEMQTHE 220
Score = 34.7 bits (76), Expect = 0.071
Identities = 23/101 (22%), Positives = 45/101 (44%)
Frame = +2
Query: 260 TEVLGQVKLKIVNAKDKQLEVTRSMKVTALAKKKTKFQTLDSFLSTVDESGKTKDVSSRC 439
T V V L+ ++ K ++ R + VT+ K + + L+ G +SS+
Sbjct: 89 TRVDASVTLEFIDVKGRECTAVRRLVVTSGTKAAALAE--EHTLAIKYPDGTVNTLSSKV 146
Query: 440 ADLDILMHEELGVSKAILNSVVFATKKIQAGHSMKEKRLRK 562
D + + + LGV +A+ V+F ++ + K L+K
Sbjct: 147 CDFNTALLKHLGVPRAVFKYVIFCHQEDSTWPLSEPKELKK 187
>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical
protein T04H1.4a protein.
Length = 1298
Score = 69.7 bits (163), Expect = 2e-12
Identities = 38/72 (52%), Positives = 43/72 (59%)
Frame = +3
Query: 36 MAGVKSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPG 215
MA L IRGIRS G ED D +I F SP TLI G NG GKTT IE L + TGQMP
Sbjct: 1 MAKFLRLHIRGIRSVGDEDHDVHKIDFLSPCTLISGPNGTGKTTTIEALNFVTTGQMPT- 59
Query: 216 SRNECFVHDAKV 251
+ + F+H V
Sbjct: 60 QKKQNFIHSTDV 71
Score = 60.9 bits (141), Expect = 9e-10
Identities = 25/56 (44%), Positives = 38/56 (67%)
Frame = +1
Query: 493 KFCRICHQEDSSWPLDEGKKVKERFDEIFDADKYSDCLDRLKKIRKDYAQNLKLLE 660
K+ CHQEDS+WPL E K++K+RFD+IF K+ +R+KKI D+ + ++ E
Sbjct: 151 KYVIFCHQEDSTWPLSEPKELKKRFDDIFQLTKFVKAQERMKKIVLDFKKEMQTHE 206
Score = 34.7 bits (76), Expect = 0.071
Identities = 23/101 (22%), Positives = 45/101 (44%)
Frame = +2
Query: 260 TEVLGQVKLKIVNAKDKQLEVTRSMKVTALAKKKTKFQTLDSFLSTVDESGKTKDVSSRC 439
T V V L+ ++ K ++ R + VT+ K + + L+ G +SS+
Sbjct: 75 TRVDASVTLEFIDVKGRECTAVRRLVVTSGTKAAALAE--EHTLAIKYPDGTVNTLSSKV 132
Query: 440 ADLDILMHEELGVSKAILNSVVFATKKIQAGHSMKEKRLRK 562
D + + + LGV +A+ V+F ++ + K L+K
Sbjct: 133 CDFNTALLKHLGVPRAVFKYVIFCHQEDSTWPLSEPKELKK 173
>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
ceRAD50 protein.
Length = 1298
Score = 69.7 bits (163), Expect = 2e-12
Identities = 38/72 (52%), Positives = 43/72 (59%)
Frame = +3
Query: 36 MAGVKSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPG 215
MA L IRGIRS G ED D +I F SP TLI G NG GKTT IE L + TGQMP
Sbjct: 1 MAKFLRLHIRGIRSVGDEDHDVHKIDFLSPCTLISGPNGTGKTTTIEALNFVTTGQMPT- 59
Query: 216 SRNECFVHDAKV 251
+ + F+H V
Sbjct: 60 QKKQNFIHSTDV 71
Score = 60.9 bits (141), Expect = 9e-10
Identities = 25/56 (44%), Positives = 38/56 (67%)
Frame = +1
Query: 493 KFCRICHQEDSSWPLDEGKKVKERFDEIFDADKYSDCLDRLKKIRKDYAQNLKLLE 660
K+ CHQEDS+WPL E K++K+RFD+IF K+ +R+KKI D+ + ++ E
Sbjct: 151 KYVIFCHQEDSTWPLSEPKELKKRFDDIFQLTKFVKAQERMKKIVLDFKKEMQTHE 206
Score = 34.7 bits (76), Expect = 0.071
Identities = 23/101 (22%), Positives = 45/101 (44%)
Frame = +2
Query: 260 TEVLGQVKLKIVNAKDKQLEVTRSMKVTALAKKKTKFQTLDSFLSTVDESGKTKDVSSRC 439
T V V L+ ++ K ++ R + VT+ K + + L+ G +SS+
Sbjct: 75 TRVDASVTLEFIDVKGRECTAVRRLVVTSGTKAAALAE--EHTLAIKYPDGTVNTLSSKV 132
Query: 440 ADLDILMHEELGVSKAILNSVVFATKKIQAGHSMKEKRLRK 562
D + + + LGV +A+ V+F ++ + K L+K
Sbjct: 133 CDFNTALLKHLGVPRAVFKYVIFCHQEDSTWPLSEPKELKK 173
>AL110487-1|CAB54424.1| 610|Caenorhabditis elegans Hypothetical
protein Y39E4B.1 protein.
Length = 610
Score = 32.3 bits (70), Expect = 0.38
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +3
Query: 117 DSPLTLILGQNGCGKTTIIECLRYAITGQMPPGSRNECFVHDAKVNDQQKYSVK 278
DS + ++LG+NG GKTT+I+ + G + P N H + QK S K
Sbjct: 380 DSEIIVMLGENGTGKTTMIKMM----AGSLKPEDENTELPHVSISYKPQKISPK 429
>AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical
protein T05C3.2 protein.
Length = 1733
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/29 (48%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Frame = +3
Query: 90 DTDEQRILFDSPLTLIL-GQNGCGKTTII 173
D +Q +L +S L +IL G+NGCGKT+++
Sbjct: 446 DCAKQYVLGNSTLPIILQGENGCGKTSLM 474
>Z69787-3|CAA93638.2| 537|Caenorhabditis elegans Hypothetical
protein C44C10.4 protein.
Length = 537
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +3
Query: 126 LTLILGQNGCGKTTIIECLRYAITGQM--PPGSRNECFVHDAKV 251
+T +G NGCGK+ +IE + + + P NE +D +
Sbjct: 31 VTTFIGMNGCGKSIMIEAIAFVFGEDLPDPKNPHNEHLFYDYNI 74
>Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical
protein R13G10.1 protein.
Length = 1469
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 114 FDSPLTLILGQNGCGKTTIIECLRY 188
F LT+ILG NG GK+ +I+ L +
Sbjct: 113 FHKNLTMILGPNGSGKSNVIDALLF 137
>L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome
condensation protein protein.
Length = 1469
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 114 FDSPLTLILGQNGCGKTTIIECLRY 188
F LT+ILG NG GK+ +I+ L +
Sbjct: 113 FHKNLTMILGPNGSGKSNVIDALLF 137
>U40424-5|AAA81461.2| 638|Caenorhabditis elegans Hypothetical
protein C24A3.1 protein.
Length = 638
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +1
Query: 556 KERFDEIFDADKYSDCLDRLKKIRKDYAQNLKLLEQEVAHLTEKKPDLDQEKLNVVNSRV 735
KE+ D D+ D + RL+ D + L Q++ + KK D+D+EKLN R+
Sbjct: 224 KEQRDREKDSKTAGDGIQRLQ----DMIRQQDLARQDIMNNLSKKGDVDKEKLNEETRRL 279
>EF472000-1|ABQ96385.1| 1142|Caenorhabditis elegans SMG-3 protein.
Length = 1142
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = +1
Query: 514 QEDSSWPLDEGKKVKERFDEIFDADK----YSDCLDRLKKIRKDYAQNLKLLEQEVAHLT 681
+ED + L+ G+K+ E +++ ++ Y D +D + + KD + + A +
Sbjct: 317 EEDEAANLEMGRKLAEGAIKLWSDEETKAFYEDLIDLRQMVPKDLYKESEQRTLSKAKMA 376
Query: 682 EKKPDLDQEKLN 717
E+ D+D E +N
Sbjct: 377 ERIEDVDMENIN 388
>AC084197-22|AAK68590.2| 1142|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 3 protein.
Length = 1142
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = +1
Query: 514 QEDSSWPLDEGKKVKERFDEIFDADK----YSDCLDRLKKIRKDYAQNLKLLEQEVAHLT 681
+ED + L+ G+K+ E +++ ++ Y D +D + + KD + + A +
Sbjct: 317 EEDEAANLEMGRKLAEGAIKLWSDEETKAFYEDLIDLRQMVPKDLYKESEQRTLSKAKMA 376
Query: 682 EKKPDLDQEKLN 717
E+ D+D E +N
Sbjct: 377 ERIEDVDMENIN 388
>Z93390-7|CAB07677.1| 931|Caenorhabditis elegans Hypothetical
protein VT23B5.2 protein.
Length = 931
Score = 28.7 bits (61), Expect = 4.7
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = -2
Query: 751 SLGEKKPGN*LH*VFPGLNLVSSLLNEPLLVQATLS-SVHN-PFLFFLNDLSNHCIYQHQ 578
SLG +K + G +L+SSL+ + + Q LS ++ N +L LN L+ C Y
Sbjct: 133 SLGGQKANVAIETTGRGASLLSSLIGQQSVTQRWLSGNISNFQYLMHLNTLAGRC-YNDL 191
Query: 577 KFHQIFP 557
+ IFP
Sbjct: 192 SQYPIFP 198
>AL032675-2|CAA21780.1| 931|Caenorhabditis elegans Hypothetical
protein VT23B5.2 protein.
Length = 931
Score = 28.7 bits (61), Expect = 4.7
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = -2
Query: 751 SLGEKKPGN*LH*VFPGLNLVSSLLNEPLLVQATLS-SVHN-PFLFFLNDLSNHCIYQHQ 578
SLG +K + G +L+SSL+ + + Q LS ++ N +L LN L+ C Y
Sbjct: 133 SLGGQKANVAIETTGRGASLLSSLIGQQSVTQRWLSGNISNFQYLMHLNTLAGRC-YNDL 191
Query: 577 KFHQIFP 557
+ IFP
Sbjct: 192 SQYPIFP 198
>Z70268-5|CAJ85767.2| 1204|Caenorhabditis elegans Hypothetical protein
T21E8.1b protein.
Length = 1204
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +3
Query: 135 ILGQNGCGKTTIIECLR---YAITGQMPPGSRNECFVHDAKVN 254
++G +GCGK+TII L +A+ G++ S N V D +N
Sbjct: 990 LVGPSGCGKSTIISLLERFYHAVDGEVKIDSEN---VEDINLN 1029
>Z70268-4|CAA94220.3| 1263|Caenorhabditis elegans Hypothetical protein
T21E8.1a protein.
Length = 1263
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +3
Query: 135 ILGQNGCGKTTIIECLR---YAITGQMPPGSRNECFVHDAKVN 254
++G +GCGK+TII L +A+ G++ S N V D +N
Sbjct: 1049 LVGPSGCGKSTIISLLERFYHAVDGEVKIDSEN---VEDINLN 1088
>Z70268-3|CAA94219.3| 1263|Caenorhabditis elegans Hypothetical protein
T21E8.2 protein.
Length = 1263
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +3
Query: 135 ILGQNGCGKTTIIECLR---YAITGQMPPGSRNECFVHDAKVN 254
++G +GCGK+TII L +A+ G++ S N V D +N
Sbjct: 1049 LVGPSGCGKSTIISLLERFYHAVDGEVKIDSEN---VEDINLN 1088
>Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical
protein T11B7.4d protein.
Length = 1424
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 598 DCLDRLKKIRKDYAQNLKLLEQEVAHLTEKKPDLDQE 708
D D LKK + +Y ++L L +EV EK+P + +E
Sbjct: 466 DPADALKKEKVNYGEDLVALIKEVEQSKEKEPKVKKE 502
>Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical
protein T11B7.4d protein.
Length = 1424
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 598 DCLDRLKKIRKDYAQNLKLLEQEVAHLTEKKPDLDQE 708
D D LKK + +Y ++L L +EV EK+P + +E
Sbjct: 466 DPADALKKEKVNYGEDLVALIKEVEQSKEKEPKVKKE 502
>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
protein Y26D4A.9 protein.
Length = 1435
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Frame = +1
Query: 547 KKVKERFDEIFDA--DKYSDCLDRLKKIRKDYAQNLKLLEQE----VAHLTEKKPDLDQE 708
+KVKE +E+ Y DCL+++ K +++ + LEQE + EK + +E
Sbjct: 624 EKVKEAVEEVKKVLGVNYEDCLEKIGKAQEETEKVKTELEQEKGIDYQSILEKIKEAREE 683
Query: 709 KLNVVNS 729
NV+ S
Sbjct: 684 VKNVIRS 690
>AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transporter
family protein 2 protein.
Length = 1551
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 111 LFDSPLTLILGQNGCGKTTIIECL 182
L++ +T +LG NG GKTT + L
Sbjct: 357 LYEGQITGLLGHNGAGKTTTMSIL 380
>AC090999-11|ABD63207.1| 356|Caenorhabditis elegans Hypothetical
protein Y82E9BR.4 protein.
Length = 356
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 568 DEIFDADKYS-DCLDRLKKIRKDYAQNLKLLEQEVAHLTEKKPDLDQEKLNVVNSRVFF 741
DEI + + + + L ++ +++ + Q + +E E TE +DQ + + N+R+ F
Sbjct: 147 DEICEYGRLTKNILQQIADLQRSFEQENEQVENESRERTENSLSVDQTRQGIENARLVF 205
>AC006607-5|AAF60371.2| 640|Caenorhabditis elegans Hypothetical
protein C09E7.4 protein.
Length = 640
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +1
Query: 523 SSWPLDEGKKVKERFDEIFDADKYSDCLDRLKKIRKDYAQNLKLLEQE-VAHLTEKKPDL 699
SS+ + EGK+ +EI + + LK I +DY Q +L Q+ + + + D
Sbjct: 261 SSFLVSEGKRYSLSKEEIRNIRVVGEGFSELKDIDEDYLQYYRLCSQKSIENAVNRCLDP 320
Query: 700 DQEKL 714
D+E +
Sbjct: 321 DEEDI 325
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,755,288
Number of Sequences: 27780
Number of extensions: 389233
Number of successful extensions: 1404
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1404
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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