Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40054
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...   108   3e-24
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score =  108 bits (260), Expect = 3e-24
 Identities = 50/88 (56%), Positives = 68/88 (77%), Gaps = 1/88 (1%)
 Frame = +2

Query: 254 LVFVGDRKILPKPSHKTRVA-NKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDG 430
           ++ +  R+ILPKP   ++    KQKRPRSRTLT+V+DA L++LV+PAE+VG+RIRVKLDG
Sbjct: 91  ILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVHDAWLDELVYPAEVVGRRIRVKLDG 150

Query: 431 SQLIKVHLDKNQQTTIEHKVDTFQSVTR 514
            ++ KVHLDK+ QT + HK+  F SV R
Sbjct: 151 KKVYKVHLDKSHQTNVGHKIGVFASVYR 178



 Score =  105 bits (251), Expect = 3e-23
 Identities = 48/83 (57%), Positives = 63/83 (75%)
 Frame = +3

Query: 3   KIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMP 182
           K++K+ G      E  +SQAL++LETN D+++QL+ELYI   KE+EL NK +IIIYVP+P
Sbjct: 7   KLLKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVP 66

Query: 183 KLKAFQKIQIRLVRELEKKFSGK 251
           +LKAF KI   LVRELEKKF G+
Sbjct: 67  QLKAFHKIHPALVRELEKKFGGR 89



 Score = 31.5 bits (68), Expect = 0.48
 Identities = 11/15 (73%), Positives = 15/15 (100%)
 Frame = +1

Query: 511 KKLTGREVTFEFPEP 555
           +KLTG++VTFEFP+P
Sbjct: 178 RKLTGKDVTFEFPDP 192


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 67  SNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCR 177
           S+SK T      F SF  Q ++K  YT  S SSS  R
Sbjct: 376 SSSKKTTKEDDFFDSFETQPVQKSRYTASSSSSSTSR 412


>Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical
           protein F45H11.3 protein.
          Length = 738

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -2

Query: 89  VGVGFEFDQRLRDRGLEGIRLSTARFDDL 3
           V VGFE   RLRD+GL   +LS   +D L
Sbjct: 522 VEVGFENWIRLRDKGLSHSQLSCQLYDTL 550


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,719,252
Number of Sequences: 27780
Number of extensions: 248130
Number of successful extensions: 603
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)