Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40048
         (248 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass...    26   3.1  
AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf (d...    26   4.1  
AC006701-4|AAK68403.2|  606|Caenorhabditis elegans Hypothetical ...    26   4.1  
Z81139-3|CAB03482.1|  520|Caenorhabditis elegans Hypothetical pr...    25   5.4  
AC084159-14|AAK39369.2|  480|Caenorhabditis elegans Hypothetical...    25   9.4  

>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 162 protein.
          Length = 2643

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 142  SKVSIIVTTAAPPFKLKRITASRQK 68
            S VSII   A  PF LK +  S+QK
Sbjct: 1597 SNVSIIERVATQPFSLKIVHRSKQK 1621


>AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 3 protein.
          Length = 666

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -1

Query: 221 SPPGVKWLLEPIDIHDVNAP 162
           SP   KWL EPI  HD +AP
Sbjct: 625 SPIQTKWLAEPI-YHDFDAP 643


>AC006701-4|AAK68403.2|  606|Caenorhabditis elegans Hypothetical
           protein Y104H12D.3 protein.
          Length = 606

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 5   IFTGGRTSCGVRAGG 49
           +F GG+ SCGV AGG
Sbjct: 190 MFHGGKDSCGVVAGG 204


>Z81139-3|CAB03482.1|  520|Caenorhabditis elegans Hypothetical
           protein W05H5.3 protein.
          Length = 520

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 15/60 (25%), Positives = 26/60 (43%)
 Frame = +3

Query: 15  VVGPLVESARVGTTXPAYFCREAVMRFSLKGGAAVVTIIETLELISQGGWRIYVVDVYGL 194
           V+G      RV  T   +        FS++ GAA+  ++  +  I + G    V  ++GL
Sbjct: 417 VMGIWTLGVRVIRTVGKFSKMNPATGFSVQFGAAITALVNNMYNIPESGTHCLVGSIFGL 476


>AC084159-14|AAK39369.2|  480|Caenorhabditis elegans Hypothetical
           protein Y73B3A.6 protein.
          Length = 480

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 218 PPGVKWLLEPIDIHDVNAP 162
           PPG   L++P+D+H  N P
Sbjct: 348 PPGTTSLIQPLDVH-FNGP 365


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,576,814
Number of Sequences: 27780
Number of extensions: 117575
Number of successful extensions: 236
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 12,740,198
effective HSP length: 62
effective length of database: 11,017,838
effective search space used: 220356760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)