Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40041
(887 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ276028-1|CAC81655.1| 816|Caenorhabditis elegans TRP homlogous... 31 1.1
AF040654-5|AAN65302.2| 816|Caenorhabditis elegans Trp (transien... 31 1.1
AF040654-4|AAN65303.2| 886|Caenorhabditis elegans Trp (transien... 31 1.1
Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical pr... 30 2.5
Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical pr... 30 2.5
AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein. 30 2.5
Z82271-6|CAB05213.1| 1091|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z73102-19|CAA97421.1| 1091|Caenorhabditis elegans Hypothetical p... 29 3.4
>AJ276028-1|CAC81655.1| 816|Caenorhabditis elegans TRP homlogous
cation channel proteinprotein.
Length = 816
Score = 31.1 bits (67), Expect = 1.1
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Frame = +3
Query: 234 LPRYRFSLYDGLGQPATIAASSETSGVYTMTSSELTTRLK-IDAMSEDSRTDYDESHYDC 410
L R R + Y L P+ I S+ +Y EL+ LK + + + RTDY+E C
Sbjct: 193 LSRSRINAYRALTSPSLICLSARDPILYAF---ELSWELKRLSFIENEFRTDYEELSQKC 249
Query: 411 YKQAKENDLAEFDSISSILKNKAETLNHVTNS 506
K + D + K LNH TN+
Sbjct: 250 QKFC----VHMLDQVRG-SKELEVVLNHTTNA 276
>AF040654-5|AAN65302.2| 816|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 2, isoform a
protein.
Length = 816
Score = 31.1 bits (67), Expect = 1.1
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Frame = +3
Query: 234 LPRYRFSLYDGLGQPATIAASSETSGVYTMTSSELTTRLK-IDAMSEDSRTDYDESHYDC 410
L R R + Y L P+ I S+ +Y EL+ LK + + + RTDY+E C
Sbjct: 193 LSRSRINAYRALTSPSLICLSARDPILYAF---ELSWELKRLSFIENEFRTDYEELSQKC 249
Query: 411 YKQAKENDLAEFDSISSILKNKAETLNHVTNS 506
K + D + K LNH TN+
Sbjct: 250 QKFC----VHMLDQVRG-SKELEVVLNHTTNA 276
>AF040654-4|AAN65303.2| 886|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 2, isoform b
protein.
Length = 886
Score = 31.1 bits (67), Expect = 1.1
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Frame = +3
Query: 234 LPRYRFSLYDGLGQPATIAASSETSGVYTMTSSELTTRLK-IDAMSEDSRTDYDESHYDC 410
L R R + Y L P+ I S+ +Y EL+ LK + + + RTDY+E C
Sbjct: 193 LSRSRINAYRALTSPSLICLSARDPILYAF---ELSWELKRLSFIENEFRTDYEELSQKC 249
Query: 411 YKQAKENDLAEFDSISSILKNKAETLNHVTNS 506
K + D + K LNH TN+
Sbjct: 250 QKFC----VHMLDQVRG-SKELEVVLNHTTNA 276
>Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical protein
K04G2.8b protein.
Length = 1188
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +3
Query: 294 SSETSGVYTMT---SSELTTRLKIDAMSEDSRTDYDESHYDCYKQAKENDLAEFD 449
+S TSG T E+ L +D + +D DY H++ Y+ ++ D +FD
Sbjct: 939 NSSTSGAAANTMRFDDEIDASLPMDCVDDDDY-DYTYDHFEDYEDEEDPDATQFD 992
>Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical protein
K04G2.8a protein.
Length = 1186
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +3
Query: 294 SSETSGVYTMT---SSELTTRLKIDAMSEDSRTDYDESHYDCYKQAKENDLAEFD 449
+S TSG T E+ L +D + +D DY H++ Y+ ++ D +FD
Sbjct: 937 NSSTSGAAANTMRFDDEIDASLPMDCVDDDDY-DYTYDHFEDYEDEEDPDATQFD 990
>AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.
Length = 1186
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +3
Query: 294 SSETSGVYTMT---SSELTTRLKIDAMSEDSRTDYDESHYDCYKQAKENDLAEFD 449
+S TSG T E+ L +D + +D DY H++ Y+ ++ D +FD
Sbjct: 937 NSSTSGAAANTMRFDDEIDASLPMDCVDDDDY-DYTYDHFEDYEDEEDPDATQFD 990
>Z82271-6|CAB05213.1| 1091|Caenorhabditis elegans Hypothetical
protein F54E12.2 protein.
Length = 1091
Score = 29.5 bits (63), Expect = 3.4
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 13/73 (17%)
Frame = +3
Query: 327 SSELTTRLKIDAMSEDSRTDYDESHYDC----YKQAKENDLAEFDSI---------SSIL 467
SS TR+ D S+DS++D + C +Q+KE+D E DS+ S I+
Sbjct: 2 SSPRRTRIMFDTSSDDSQSDEKIDDFICRSSPQRQSKESDDQE-DSVVDESMKSVNSPIV 60
Query: 468 KNKAETLNHVTNS 506
+ T +H TNS
Sbjct: 61 NTPSSTASHCTNS 73
>Z73102-19|CAA97421.1| 1091|Caenorhabditis elegans Hypothetical
protein F54E12.2 protein.
Length = 1091
Score = 29.5 bits (63), Expect = 3.4
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 13/73 (17%)
Frame = +3
Query: 327 SSELTTRLKIDAMSEDSRTDYDESHYDC----YKQAKENDLAEFDSI---------SSIL 467
SS TR+ D S+DS++D + C +Q+KE+D E DS+ S I+
Sbjct: 2 SSPRRTRIMFDTSSDDSQSDEKIDDFICRSSPQRQSKESDDQE-DSVVDESMKSVNSPIV 60
Query: 468 KNKAETLNHVTNS 506
+ T +H TNS
Sbjct: 61 NTPSSTASHCTNS 73
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,897,705
Number of Sequences: 27780
Number of extensions: 279404
Number of successful extensions: 651
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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