Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40002
         (741 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48809-1|CAA88745.1| 1299|Caenorhabditis elegans Hypothetical pr...    33   0.28 
AF022985-4|AAB69965.1|  362|Caenorhabditis elegans Hypothetical ...    29   2.6  
U41273-1|AAA82453.1|  516|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AF078782-1|AAC26913.1|  361|Caenorhabditis elegans Hypothetical ...    28   6.0  

>Z48809-1|CAA88745.1| 1299|Caenorhabditis elegans Hypothetical
           protein T01E8.3 protein.
          Length = 1299

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = +2

Query: 497 SKRALKDVLHILYEYLKTFEVSDYIRAYEIFIACSSNTKKQFIMELTEFIGNHLSRQ 667
           SK  L+DVLH++  Y   F  S+Y     I   CS   ++    EL + +G++L  Q
Sbjct: 374 SKILLRDVLHVIRHY--AFVTSEYPVILSIEDNCSVPAQRLLAQELKDILGDYLLTQ 428


>AF022985-4|AAB69965.1|  362|Caenorhabditis elegans Hypothetical
           protein T15B7.12 protein.
          Length = 362

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +3

Query: 138 DCFNYIHVQSPIVNILLYFIVTVPFVI*NGFTNRTQHEYNIRVFNESLLEQILLKISDI 314
           D  NY    S  +NIL +F  T  F+I +  + + +  +        +LE+I LK S +
Sbjct: 292 DYINYFQNLSIFMNILAFFNTTTSFIIYSSLSAKFRRIFAQLFLPSQVLEKIYLKRSTV 350


>U41273-1|AAA82453.1|  516|Caenorhabditis elegans Hypothetical
           protein C26B9.5 protein.
          Length = 516

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 314 NVAYFQQYLFQ*TFIENSNVVFML 243
           N  Y Q+Y +  TF +N N+VF++
Sbjct: 73  NAMYNQRYWYNPTFTQNKNIVFLM 96


>AF078782-1|AAC26913.1|  361|Caenorhabditis elegans Hypothetical
           protein H34P18.1 protein.
          Length = 361

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +3

Query: 138 DCFNYIHVQSPIVNILLYFIVTVPFVI*NGFTNRTQHEYNIRVFNESLLEQILLKIS 308
           D  NY    +  +NIL +F  T  F+I +  + + +  +    F   +LE I LK S
Sbjct: 291 DYINYFQNLTIFINILAFFNSTTSFIIYSSLSAKFRKIFAQLFFPTHILETIYLKRS 347


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,638,050
Number of Sequences: 27780
Number of extensions: 231666
Number of successful extensions: 541
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)