Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30001
         (719 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81519-6|CAB04220.2| 1631|Caenorhabditis elegans Hypothetical pr...    31   0.83 
AL034543-6|CAJ43443.1| 1631|Caenorhabditis elegans Hypothetical ...    31   0.83 
U58758-10|AAB93435.1|  349|Caenorhabditis elegans Hypothetical p...    30   1.9  
Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical p...    28   7.7  
Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z81519-6|CAB04220.2| 1631|Caenorhabditis elegans Hypothetical
           protein F29C12.3 protein.
          Length = 1631

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 16/63 (25%), Positives = 31/63 (49%)
 Frame = -3

Query: 462 INERILNIPAAISVPLFASLQTELEKAHRKNMLYNFKYLIWISKTYTTGESSEVLFANQE 283
           INER L +     V +F     +L+  ++   L  FK +IW+ K Y      +++ ++  
Sbjct: 125 INERNLVVILTTHVDIFIVRAIDLQMENQTERLEAFKLIIWMLKIYEKSNLKKLIDSSAA 184

Query: 282 EKS 274
           +K+
Sbjct: 185 QKN 187


>AL034543-6|CAJ43443.1| 1631|Caenorhabditis elegans Hypothetical
           protein F29C12.3 protein.
          Length = 1631

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 16/63 (25%), Positives = 31/63 (49%)
 Frame = -3

Query: 462 INERILNIPAAISVPLFASLQTELEKAHRKNMLYNFKYLIWISKTYTTGESSEVLFANQE 283
           INER L +     V +F     +L+  ++   L  FK +IW+ K Y      +++ ++  
Sbjct: 125 INERNLVVILTTHVDIFIVRAIDLQMENQTERLEAFKLIIWMLKIYEKSNLKKLIDSSAA 184

Query: 282 EKS 274
           +K+
Sbjct: 185 QKN 187


>U58758-10|AAB93435.1|  349|Caenorhabditis elegans Hypothetical
           protein ZK1127.4 protein.
          Length = 349

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = -3

Query: 507 IKYILADDSQHTGLVINERILNIPAAISVPLFASLQTELEKAHRKNMLYNFKYLIWISK 331
           I+ I       + L +NER+LN P  +   +F S++ +L     K     +K +I+I K
Sbjct: 175 IEEIQVSGDGKSALFVNERLLNFPTIVVPQIFGSIREDLSGFETK-----YKTIIYIQK 228


>Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical
            protein F10F2.1 protein.
          Length = 2507

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 292  KSRREVFSKRSNCSFDVDVTDQADLSQWDYE 200
            K  + +FSKR N S   ++ D++D+ +W  E
Sbjct: 1655 KVLKGLFSKRQNSSGSHELVDESDIDKWAQE 1685


>Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical protein
            F10F2.1 protein.
          Length = 2507

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 292  KSRREVFSKRSNCSFDVDVTDQADLSQWDYE 200
            K  + +FSKR N S   ++ D++D+ +W  E
Sbjct: 1655 KVLKGLFSKRQNSSGSHELVDESDIDKWAQE 1685


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,682,414
Number of Sequences: 27780
Number of extensions: 314925
Number of successful extensions: 723
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)