Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30068
         (572 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70680-7|CAA94572.2|  227|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF003386-13|AAB54250.1|  311|Caenorhabditis elegans Blistered cu...    27   7.2  
Z66565-2|CAA91478.2|  502|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z70680-7|CAA94572.2|  227|Caenorhabditis elegans Hypothetical
           protein C25G4.3 protein.
          Length = 227

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
 Frame = +3

Query: 42  SVVERVEYRYGRP-GPD----RGQAFGVDRLAGFRLLASHTGIRHRQVQEELLADGERVQ 206
           SV+ R E+RY +  G +     G  +G+D     RLL    G + R++ ++ +    R+ 
Sbjct: 34  SVLSRFEWRYDKTLGKNFQKTMGMRYGIDMGLEDRLLLVSLGTKQRRLDDKKVVQLSRIL 93

Query: 207 PRPAQHVPAAHESRLRMALSLKEMR 281
                 V A  E   R+ L +  +R
Sbjct: 94  EERIAEVVATDEMLGRLQLQITRVR 118


>AF003386-13|AAB54250.1|  311|Caenorhabditis elegans Blistered
           cuticle protein 2 protein.
          Length = 311

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +2

Query: 215 CTACTRGPRVPPPDGPISEGDARSGRRGHGPCQGQ 319
           C +C  GP  PP  GP  E D R GR G     G+
Sbjct: 115 CCSCKTGPSGPP--GPPGE-DGRDGRDGKPGLNGE 146


>Z66565-2|CAA91478.2|  502|Caenorhabditis elegans Hypothetical
           protein T04F8.2 protein.
          Length = 502

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -3

Query: 567 IHCGWPQTQEKAVYH*HLTHHKSCGREVQQAFTDDIHNFHWYRE 436
           +H  WP++  +  +  +   H+  GR+    F +D  NF +Y E
Sbjct: 441 VHQFWPKSSYRKFFADYTNGHRRLGRDDSHEF-NDYDNFLFYAE 483


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,681,343
Number of Sequences: 27780
Number of extensions: 245678
Number of successful extensions: 595
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)