Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20188
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39852-6|AAK39259.1|  418|Caenorhabditis elegans Hypothetical pr...   126   1e-29
AF039713-13|AAB96719.2|  690|Caenorhabditis elegans Hypothetical...    30   1.5  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    29   3.4  
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    28   5.9  
AC024776-1|AAK68468.1|  338|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U80450-11|AAM15595.1|  664|Caenorhabditis elegans Temporarily as...    28   7.9  
AF036700-2|AAB88365.1|  550|Caenorhabditis elegans Hypothetical ...    28   7.9  
AC024826-8|AAF60795.2|  580|Caenorhabditis elegans Hypothetical ...    28   7.9  

>U39852-6|AAK39259.1|  418|Caenorhabditis elegans Hypothetical
           protein K10C2.4 protein.
          Length = 418

 Score =  126 bits (305), Expect = 1e-29
 Identities = 64/160 (40%), Positives = 93/160 (58%), Gaps = 1/160 (0%)
 Frame = +2

Query: 254 LPLGPFTAKNLGSTISPWIVTLEALRPFIVDNFPQDPTPFPYLRHDDKFNFDIKLEVDIQ 433
           +PLGPF AK+  +T+SPW+V++EALRP+ V+N  QDP P  YL HDD F  DI L V I+
Sbjct: 247 VPLGPFLAKSFATTVSPWVVSIEALRPYFVENPVQDPVPPAYLHHDDPFTLDINLAVSIR 306

Query: 434 TEKSPVVTTVCRSNYRYMYWTVKQQW-RTDCHGLQPQTGRLARLGHHQWGGGGLVWEHVG 610
            E   V   VC++N++++YWT+KQQ      +G   + G L   G       G     + 
Sbjct: 307 PEGDAVDHIVCKTNFKHLYWTLKQQLAHHTVNGCNLRAGDLLGSGTVSGPEEGAYGSMLE 366

Query: 611 TVLEGTKPVRLSTGEERKFIQDGDTSRCAATAQRDGLRIG 730
               G K V + + E RKF++DGD    +   +++G+RIG
Sbjct: 367 LSWRGAKEVPVGS-EIRKFLKDGDEVNLSGVCEKNGVRIG 405



 Score =  113 bits (272), Expect = 1e-25
 Identities = 51/81 (62%), Positives = 60/81 (74%)
 Frame = +3

Query: 12  SIVISGTPIHRPYGQTLPVEGAAPHFGPCRLMDFELEVGAFVGGPPTQLGERVCAKDAED 191
           SIV+SGT + RP GQT   +   P FGP +LMDFELE+  FVGGP  +LG RV  + AED
Sbjct: 166 SIVVSGTDLKRPVGQTKAPDAEVPSFGPSKLMDFELEMAFFVGGPENELGTRVPIEKAED 225

Query: 192 KIFGFVLLNDWSARDIQKWEY 254
           +IFG VL+NDWSARDIQ WEY
Sbjct: 226 RIFGVVLMNDWSARDIQAWEY 246


>AF039713-13|AAB96719.2|  690|Caenorhabditis elegans Hypothetical
           protein F57B10.1 protein.
          Length = 690

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -1

Query: 235 SRALQSFKSTKPKILSSASLAQTLSPSCVGGPPTNAPTSSSKSISLQGPKWG-AAPSTGK 59
           S  L  FKS++P++L+ AS++   +PS    P + + T ++ S S      G    STG+
Sbjct: 189 SNGLVRFKSSQPRVLNPASISLN-APSSSFNPQSTSSTPATSSSSSSSTNGGFVKSSTGE 247


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
           protein Y40C5A.3 protein.
          Length = 2344

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -2

Query: 684 VSPSCMNFLSS-PVERRTGLVPSRTVPTCSQTSPPPPH*WCPSRASLPV*G 535
           ++PS +  +S+ P  R++   PS  VP  S  SP PP    P  +++P+ G
Sbjct: 832 LTPSELPIISNLPASRQSTSAPS--VPNVSNNSPSPPSQSIPIESTVPIFG 880


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/39 (28%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
 Frame = -1

Query: 613 SSNMLPNE-SAASPLMVPEPSKSPGL--RLQPVTVCAPL 506
           S+N++P++   A+ +M+P+P K P +    +P+++ +P+
Sbjct: 376 STNIIPDKWKKANVIMIPKPKKDPAIASSYRPISLLSPI 414


>AC024776-1|AAK68468.1|  338|Caenorhabditis elegans Hypothetical
           protein Y41D4B.18 protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = -1

Query: 211 STKPKILS---SASLAQTLSPSCVGGPPTNAPTSSSKSISLQ 95
           +T PK  S   S+S + T SP+    P T+ PT++S+S + Q
Sbjct: 268 ATSPKTSSQPVSSSTSSTSSPAPTNPPTTSRPTTASQSTASQ 309


>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
           protein T07D4.4a protein.
          Length = 1022

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = -1

Query: 235 SRALQSFKSTKP--KILSSASLAQTLSPSCVGGPPTNAPTSSSKSISLQGPKWGAAPSTG 62
           SR + SF S KP  + +SS S A + S SC    PT+  TS+  S   Q   + + PS G
Sbjct: 280 SRTVASFGS-KPSNENISSNSSALSSSSSCFAAKPTS--TSAGGSFGNQPSSFSSKPSFG 336


>U80450-11|AAM15595.1|  664|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 163, isoform d protein.
          Length = 664

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/40 (42%), Positives = 18/40 (45%)
 Frame = -2

Query: 375 GNGVGS*GKLSTMNGRSASKVTIHGEMVLPRFLAVNGPRG 256
           G G G     STMN RSAS     G   L R  +VN   G
Sbjct: 621 GGGGGGHNGYSTMNNRSASPRLFGGSSTLSRRSSVNSVDG 660


>AF036700-2|AAB88365.1|  550|Caenorhabditis elegans Hypothetical
           protein M04G7.2 protein.
          Length = 550

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 13/98 (13%)
 Frame = +1

Query: 328 ASVHRRQLPSGPDS-VPLLET--RR*IQFRHQTGSGHSN*KVPGGD----------HRLP 468
           A V   QL S  DS V  +E   RR  Q+ H      SN  VP G+          H + 
Sbjct: 121 ADVSINQLESEMDSFVKKIEPNERRATQYIHSNSLSRSNEAVPPGNVKTSQQKADHHLIR 180

Query: 469 FELSVHVLDGETAMAHRLSRAATSDRETCSARAPSVGR 582
              S+  LDGET   +  +  A+ D+   +A +PS  R
Sbjct: 181 TTRSLIGLDGETEAVYSKATKASPDKGKLTADSPSSRR 218


>AC024826-8|AAF60795.2|  580|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.3a protein.
          Length = 580

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 517 RLSRAATSDRETCSARAPSVGRRRTR 594
           R SR+ + DR T   R+PS  RRR+R
Sbjct: 66  RRSRSRSKDRRTTRRRSPSRERRRSR 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,911,028
Number of Sequences: 27780
Number of extensions: 505301
Number of successful extensions: 1797
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1793
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)