Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20184
         (765 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78540-6|CAD30431.1|  887|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z78540-5|CAB01738.2|  793|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z72501-3|CAD30430.1|  887|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AJ133838-1|CAB44432.1|  793|Caenorhabditis elegans DYC-1 protein...    28   6.3  

>Z78540-6|CAD30431.1|  887|Caenorhabditis elegans Hypothetical
           protein C33G3.1b protein.
          Length = 887

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 21/78 (26%), Positives = 38/78 (48%)
 Frame = -1

Query: 489 SSNIFSKYLYRRISFTNTCSKFRMVSISSLAEKMQVLVLGDSPSIDTEPPGSSRPPAMST 310
           +SN+  K  +  I  +N      + S ++++ +M+   +GD+P   + PP   + P  S+
Sbjct: 607 TSNVM-KPSHFNILMSNPLVDINVPSGAAMSSRMEQFDMGDTPGTSSTPPKKEKKP--SS 663

Query: 309 SI*LRHSVGSRVLIRPSL 256
            I LR    SR+   P L
Sbjct: 664 GI-LRGENFSRMSFNPKL 680


>Z78540-5|CAB01738.2|  793|Caenorhabditis elegans Hypothetical
           protein C33G3.1a protein.
          Length = 793

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 21/78 (26%), Positives = 38/78 (48%)
 Frame = -1

Query: 489 SSNIFSKYLYRRISFTNTCSKFRMVSISSLAEKMQVLVLGDSPSIDTEPPGSSRPPAMST 310
           +SN+  K  +  I  +N      + S ++++ +M+   +GD+P   + PP   + P  S+
Sbjct: 513 TSNVM-KPSHFNILMSNPLVDINVPSGAAMSSRMEQFDMGDTPGTSSTPPKKEKKP--SS 569

Query: 309 SI*LRHSVGSRVLIRPSL 256
            I LR    SR+   P L
Sbjct: 570 GI-LRGENFSRMSFNPKL 586


>Z72501-3|CAD30430.1|  887|Caenorhabditis elegans Hypothetical
           protein C33G3.1b protein.
          Length = 887

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 21/78 (26%), Positives = 38/78 (48%)
 Frame = -1

Query: 489 SSNIFSKYLYRRISFTNTCSKFRMVSISSLAEKMQVLVLGDSPSIDTEPPGSSRPPAMST 310
           +SN+  K  +  I  +N      + S ++++ +M+   +GD+P   + PP   + P  S+
Sbjct: 607 TSNVM-KPSHFNILMSNPLVDINVPSGAAMSSRMEQFDMGDTPGTSSTPPKKEKKP--SS 663

Query: 309 SI*LRHSVGSRVLIRPSL 256
            I LR    SR+   P L
Sbjct: 664 GI-LRGENFSRMSFNPKL 680


>AJ133838-1|CAB44432.1|  793|Caenorhabditis elegans DYC-1 protein
           protein.
          Length = 793

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 21/78 (26%), Positives = 38/78 (48%)
 Frame = -1

Query: 489 SSNIFSKYLYRRISFTNTCSKFRMVSISSLAEKMQVLVLGDSPSIDTEPPGSSRPPAMST 310
           +SN+  K  +  I  +N      + S ++++ +M+   +GD+P   + PP   + P  S+
Sbjct: 513 TSNVM-KPSHFNILMSNPLVDINVPSGAAMSSRMEQFDMGDTPGTSSTPPKKEKKP--SS 569

Query: 309 SI*LRHSVGSRVLIRPSL 256
            I LR    SR+   P L
Sbjct: 570 GI-LRGENFSRMSFNPKL 586


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,401,152
Number of Sequences: 27780
Number of extensions: 389258
Number of successful extensions: 1409
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1406
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)