Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20155
         (667 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...    99   3e-21
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...    87   1e-17
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...    80   2e-15
AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...    59   2e-09
AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine re...    36   0.026
U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly glu...    28   5.2  
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu...    28   5.2  
U32275-1|AAA75370.1|  982|Caenorhabditis elegans serine-threonin...    28   6.8  
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U11280-5|AAA19437.1|  982|Caenorhabditis elegans Protein kinase ...    28   6.8  
AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical ...    27   9.1  

>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score = 98.7 bits (235), Expect = 3e-21
 Identities = 56/144 (38%), Positives = 70/144 (48%), Gaps = 2/144 (1%)
 Frame = +2

Query: 239 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 418
           + +  +WPKYIR+QRQ A+LQ+RLKVPP INQF   LD  +A+  FK+L+KYRPE+    
Sbjct: 52  VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAK 111

Query: 419 XXXXXXXXXXXXXXXXXXXXXRPNTIRSGTTQXXXXXXXXXXXXXXXXXXXXH*AGSL-L 595
                                RPNT+R G                            L L
Sbjct: 112 KNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHL 171

Query: 596 PALCRKMGVPYCIVKGN-PLGALV 664
           PALCRK  VPY I+KG   LG +V
Sbjct: 172 PALCRKYNVPYAIIKGKASLGTVV 195



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 20/30 (66%), Positives = 24/30 (80%)
 Frame = +3

Query: 174 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGP 263
           NPLFEKR +NF IGQ IQP +D++RFV  P
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 59



 Score = 31.9 bits (69), Expect = 0.42
 Identities = 15/29 (51%), Positives = 22/29 (75%), Gaps = 4/29 (13%)
 Frame = +3

Query: 546 LVVIAHDVDPIELVL----FCQRYAVKWA 620
           LV+IAHDV+P+E+VL     C++Y V +A
Sbjct: 155 LVLIAHDVNPLEIVLHLPALCRKYNVPYA 183


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 56/144 (38%), Positives = 70/144 (48%), Gaps = 2/144 (1%)
 Frame = +2

Query: 239 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 418
           + +  +WPKYIR+QRQ A+LQ+RLKVPP INQF   LD  +A+  FK+L+KYRPE+    
Sbjct: 52  VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPES---- 107

Query: 419 XXXXXXXXXXXXXXXXXXXXXRPNTIRSGTTQXXXXXXXXXXXXXXXXXXXXH*AGSL-L 595
                                RPNT+R G                            L L
Sbjct: 108 ----------------TEVTKRPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHL 151

Query: 596 PALCRKMGVPYCIVKGN-PLGALV 664
           PALCRK  VPY I+KG   LG +V
Sbjct: 152 PALCRKYNVPYAIIKGKASLGTVV 175



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 20/30 (66%), Positives = 24/30 (80%)
 Frame = +3

Query: 174 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGP 263
           NPLFEKR +NF IGQ IQP +D++RFV  P
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 59



 Score = 31.9 bits (69), Expect = 0.42
 Identities = 15/29 (51%), Positives = 22/29 (75%), Gaps = 4/29 (13%)
 Frame = +3

Query: 546 LVVIAHDVDPIELVL----FCQRYAVKWA 620
           LV+IAHDV+P+E+VL     C++Y V +A
Sbjct: 135 LVLIAHDVNPLEIVLHLPALCRKYNVPYA 163


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 33/56 (58%), Positives = 44/56 (78%)
 Frame = +2

Query: 239 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 406
           + +  +WPKYIR+QRQ A+LQ+RLKVPP INQF   LD  +A+  FK+L+KYRPE+
Sbjct: 155 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRPES 210



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 20/30 (66%), Positives = 24/30 (80%)
 Frame = +3

Query: 174 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGP 263
           NPLFEKR +NF IGQ IQP +D++RFV  P
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 162


>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 24/38 (63%), Positives = 30/38 (78%)
 Frame = +2

Query: 239 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 352
           + +  +WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 155 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 20/30 (66%), Positives = 24/30 (80%)
 Frame = +3

Query: 174 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGP 263
           NPLFEKR +NF IGQ IQP +D++RFV  P
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 162


>AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 6 protein.
          Length = 330

 Score = 35.9 bits (79), Expect = 0.026
 Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
 Frame = -1

Query: 448 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 329
           SF SFP  QP+   C +++P F+ N+EKA + C ++Q  G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205


>U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform a
           protein.
          Length = 1081

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
 Frame = +1

Query: 199 RTLPLVRAFSQLGTCPDL*MAQVY-PHPAPEGCTSASSESAPSDQP 333
           +T P+ R  S      DL  A VY P P PEG T          QP
Sbjct: 66  KTEPVARQVSTAQMKRDLEQAAVYVPTPIPEGSTQPQQRQQQQSQP 111


>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform b
           protein.
          Length = 1647

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
 Frame = +1

Query: 199 RTLPLVRAFSQLGTCPDL*MAQVY-PHPAPEGCTSASSESAPSDQP 333
           +T P+ R  S      DL  A VY P P PEG T          QP
Sbjct: 66  KTEPVARQVSTAQMKRDLEQAAVYVPTPIPEGSTQPQQRQQQQSQP 111


>U32275-1|AAA75370.1|  982|Caenorhabditis elegans serine-threonine
           kinase protein.
          Length = 982

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 486 PTPSDPAQHSHQAGREEEGALVVIAHDVDPIE 581
           P+PS+P   S    + E  +++  AHD DP++
Sbjct: 453 PSPSEPIPTSQPTSKSESSSILETAHD-DPLD 483


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +3

Query: 321 LRSTNLPRHWTRLQLRA 371
           +RSTNL  +WT LQLRA
Sbjct: 65  VRSTNLDTNWTWLQLRA 81


>U11280-5|AAA19437.1|  982|Caenorhabditis elegans Protein kinase
           protein 18, isoforma protein.
          Length = 982

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 486 PTPSDPAQHSHQAGREEEGALVVIAHDVDPIE 581
           P+PS+P   S    + E  +++  AHD DP++
Sbjct: 453 PSPSEPIPTSQPTSKSESSSILETAHD-DPLD 483


>AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical
           protein Y54E10A.11 protein.
          Length = 1446

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 22/74 (29%), Positives = 31/74 (41%)
 Frame = +2

Query: 164 EDRESSLREEAKELCHWSGHSANSGLVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQ 343
           + RE  L+E   EL +    S  S     C     +       V    +KV   I+QF  
Sbjct: 71  QTREKGLKE-LMELINTENSSIESSYEHFCGLVAQLTTDGSPTVRMLTMKV---ISQFLT 126

Query: 344 TLDKTTAKGLFKIL 385
            L K+ +KGL KI+
Sbjct: 127 KLKKSASKGLKKII 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,262,198
Number of Sequences: 27780
Number of extensions: 273138
Number of successful extensions: 830
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)