Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20087
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80953-3|AAB52554.1|  350|Caenorhabditis elegans Abnormal dauer ...    28   6.0  
U72884-1|AAC47389.1|  350|Caenorhabditis elegans DAF-7 protein.        28   6.0  
U72883-1|AAC47390.1|  350|Caenorhabditis elegans dauer larva dev...    28   6.0  
Z81568-9|CAB04599.2|  386|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>U80953-3|AAB52554.1|  350|Caenorhabditis elegans Abnormal dauer
           formation protein 7 protein.
          Length = 350

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 293 IARSVEAVQIPPVLYCTVPFSVNYFSIFFLFFDNGI*IKNIN 418
           I R+   V  P + YC  P   +Y  + ++  D  + I N+N
Sbjct: 299 IMRAAHKVSNPEIGYCCHPTEYDYIKLIYVNRDGRVSIANVN 340


>U72884-1|AAC47389.1|  350|Caenorhabditis elegans DAF-7 protein.
          Length = 350

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 293 IARSVEAVQIPPVLYCTVPFSVNYFSIFFLFFDNGI*IKNIN 418
           I R+   V  P + YC  P   +Y  + ++  D  + I N+N
Sbjct: 299 IMRAAHKVSNPEIGYCCHPTEYDYIKLIYVNRDGRVSIANVN 340


>U72883-1|AAC47390.1|  350|Caenorhabditis elegans dauer larva
           development regulatorygrowth factor protein.
          Length = 350

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 293 IARSVEAVQIPPVLYCTVPFSVNYFSIFFLFFDNGI*IKNIN 418
           I R+   V  P + YC  P   +Y  + ++  D  + I N+N
Sbjct: 299 IMRAAHKVSNPEIGYCCHPTEYDYIKLIYVNRDGRVSIANVN 340


>Z81568-9|CAB04599.2|  386|Caenorhabditis elegans Hypothetical
           protein K08E3.7 protein.
          Length = 386

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -3

Query: 169 ATLRRNMSNLLHCHCCPRSWCRCSKTSW 86
           AT R      +HC  C   WC   KT W
Sbjct: 348 ATERNGGCAHIHCTSCGMDWCFKCKTEW 375


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,665,701
Number of Sequences: 27780
Number of extensions: 212923
Number of successful extensions: 529
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)