Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00089
         (732 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00052-8|AAK21421.2|  707|Caenorhabditis elegans Hypothetical pr...    97   1e-20
Z82282-1|CAB05271.1|  182|Caenorhabditis elegans Hypothetical pr...    35   0.068
Z70034-1|CAA93852.2|  171|Caenorhabditis elegans Hypothetical pr...    33   0.21 
AJ512489-1|CAD54672.1|  171|Caenorhabditis elegans calmodulin-li...    33   0.21 
AJ132193-1|CAA10601.1|  149|Caenorhabditis elegans calmodulin pr...    33   0.21 
AF016429-2|AAB65364.1|  149|Caenorhabditis elegans Calmodulin pr...    33   0.21 
AC084159-17|AAK39364.1|  116|Caenorhabditis elegans Hypothetical...    32   0.36 
Z77653-1|CAB01124.1|  218|Caenorhabditis elegans Hypothetical pr...    32   0.48 
X04259-1|CAA27814.1|  161|Caenorhabditis elegans cal-1 protein.        32   0.48 
Z48585-7|CAA88482.1|  160|Caenorhabditis elegans Hypothetical pr...    31   0.84 
U70851-8|AAB09131.1|  164|Caenorhabditis elegans Calmodulin rela...    31   0.84 
AB079299-1|BAB84566.1|  160|Caenorhabditis elegans troponin C pr...    31   0.84 
U55364-9|AAA97974.1|  141|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AL023830-2|CAA19473.1|  413|Caenorhabditis elegans Hypothetical ...    30   1.9  
U97005-12|AAB52289.1| 1121|Caenorhabditis elegans Hypothetical p...    29   4.5  
AF039717-3|AAK82917.1|  530|Caenorhabditis elegans Abnormal daue...    28   5.9  
AF020344-1|AAB84392.1|  530|Caenorhabditis elegans fork head-rel...    28   5.9  

>U00052-8|AAK21421.2|  707|Caenorhabditis elegans Hypothetical
           protein K02F3.2 protein.
          Length = 707

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 48/90 (53%), Positives = 62/90 (68%)
 Frame = +1

Query: 238 QKYYDVVKSHLLTKDLKSKVITASGFPQGERKISFPYYMAFNSLLNNMELIKRVYLNATN 417
           Q+    VK HLLT  ++  +I  SG   G  K++FPYY AFNSLL  MELIKRVY++ T 
Sbjct: 224 QQIMTTVKGHLLTDFVRHNLIAVSGGASGH-KVTFPYYAAFNSLLAKMELIKRVYVSTTR 282

Query: 418 GHRTQEVTKEEFLHSAQMMSQITPLEVDIL 507
           G+   E+TKEEFLH+ Q  +Q+TP EV+IL
Sbjct: 283 GNLDIEMTKEEFLHAIQSYTQVTPYEVEIL 312



 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 38/81 (46%), Positives = 52/81 (64%)
 Frame = +2

Query: 8   VAFDEFAEVMRKTALHKKLPFNMESTFVRLYFGKDKKRLVTYPEFSQFLHDFHEEYGVEA 187
           ++ DEF  V+R T       F+  S F++ YFG DK+R V Y  F Q LHDF+EE G++A
Sbjct: 147 ISCDEFEAVIRHTQPLHDQDFDFSSEFIKRYFGADKQRNVNYHSFCQLLHDFYEEQGIQA 206

Query: 188 FKKCDKEGTGFITAGDFRNIM 250
           FK+ DK G G I++ DF+ IM
Sbjct: 207 FKRYDKNGNGTISSLDFQQIM 227



 Score = 38.7 bits (86), Expect = 0.004
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
 Frame = +3

Query: 504 IVNLCDILHHTNGRIVYNDLNSITPEQYFKQVTR--RVAEIKAVSSPEERGVLIQILEST 677
           + +L ++ H     +   D+ +I PE+  K+V++  R+  IKAV   ++RGV    LES 
Sbjct: 312 LFHLSELNHPGRKTLCLKDIQAIDPER-LKRVSQMDRLINIKAVHHKDDRGVGTAFLESA 370

Query: 678 YRFTL 692
           YRF L
Sbjct: 371 YRFLL 375


>Z82282-1|CAB05271.1|  182|Caenorhabditis elegans Hypothetical
           protein T07G12.1 protein.
          Length = 182

 Score = 34.7 bits (76), Expect = 0.068
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
 Frame = +2

Query: 20  EFAEVMRKTALHKKLPFNMESTFVRLYFGKDKKRLVTYPEFSQFLHDFHEEYGVE----A 187
           E  E MR   L+   P   E   +   +  D    + + EF + + + ++E   E    A
Sbjct: 44  ELGEAMRMLGLN---PTEEELLNMVNEYDVDGNGKIDFGEFCKMMKEMNKETDQELIRLA 100

Query: 188 FKKCDKEGTGFITAGDFRNIM 250
           FK  DK+G G+ITA +F++ M
Sbjct: 101 FKVFDKDGNGYITAQEFKHFM 121


>Z70034-1|CAA93852.2|  171|Caenorhabditis elegans Hypothetical
           protein C18E9.1 protein.
          Length = 171

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = +2

Query: 110 DKKRLVTYPEFSQFLHDFHEEYGVE----AFKKCDKEGTGFITAGDFRNIM 250
           D    + + EF Q +   ++E   E    AF+  D++G GFITA +FR  M
Sbjct: 83  DGSGTIDFGEFCQMMKRMNKENDSEMIREAFRVFDRDGNGFITADEFRYFM 133


>AJ512489-1|CAD54672.1|  171|Caenorhabditis elegans calmodulin-like
           protein protein.
          Length = 171

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = +2

Query: 110 DKKRLVTYPEFSQFLHDFHEEYGVE----AFKKCDKEGTGFITAGDFRNIM 250
           D    + + EF Q +   ++E   E    AF+  D++G GFITA +FR  M
Sbjct: 83  DGSGTIDFGEFCQMMKRMNKENDSEMIREAFRVFDRDGNGFITADEFRYFM 133


>AJ132193-1|CAA10601.1|  149|Caenorhabditis elegans calmodulin
           protein.
          Length = 149

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
 Frame = +2

Query: 110 DKKRLVTYPEF----SQFLHDFHEEYGV-EAFKKCDKEGTGFITAGDFRNIM 250
           D    + +PEF    ++ + D   E  + EAF+  DK+G GFI+A + R++M
Sbjct: 59  DGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVM 110


>AF016429-2|AAB65364.1|  149|Caenorhabditis elegans Calmodulin
           protein 1 protein.
          Length = 149

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
 Frame = +2

Query: 110 DKKRLVTYPEF----SQFLHDFHEEYGV-EAFKKCDKEGTGFITAGDFRNIM 250
           D    + +PEF    ++ + D   E  + EAF+  DK+G GFI+A + R++M
Sbjct: 59  DGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVM 110


>AC084159-17|AAK39364.1|  116|Caenorhabditis elegans Hypothetical
           protein Y73B3A.12 protein.
          Length = 116

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +2

Query: 167 EEYGVEAFKKCDKEGTGFITAGDFRNIM 250
           EE   EAF+  DK+G GFI+A + R++M
Sbjct: 32  EEEIREAFRVFDKDGNGFISAAELRHVM 59


>Z77653-1|CAB01124.1|  218|Caenorhabditis elegans Hypothetical
           protein C13C12.1 protein.
          Length = 218

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +2

Query: 125 VTYPEF----SQFLHDFHEEYGVEAFKKCDKEGTGFITAGDFRNIMM 253
           + +PEF     + + +   E   EAF+  DK+G G ITA +FR  M+
Sbjct: 134 IEFPEFCVMMKRMMKETDSEMIREAFRVFDKDGNGVITAQEFRYFMV 180


>X04259-1|CAA27814.1|  161|Caenorhabditis elegans cal-1 protein.
          Length = 161

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +2

Query: 125 VTYPEF----SQFLHDFHEEYGVEAFKKCDKEGTGFITAGDFRNIMM 253
           + +PEF     + + +   E   EAF+  DK+G G ITA +FR  M+
Sbjct: 77  IEFPEFCVMMKRMMKETDSEMIREAFRVFDKDGNGVITAQEFRYFMV 123


>Z48585-7|CAA88482.1|  160|Caenorhabditis elegans Hypothetical
           protein ZK673.7 protein.
          Length = 160

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +2

Query: 167 EEYGVEAFKKCDKEGTGFITAGDFRNIM 250
           EE   EAF+  DKEG G+I   D R+I+
Sbjct: 94  EEELREAFRLYDKEGNGYINVSDLRDIL 121


>U70851-8|AAB09131.1|  164|Caenorhabditis elegans Calmodulin related
           genes protein 3 protein.
          Length = 164

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +2

Query: 125 VTYPEF----SQFLHDFHEEYGVEAFKKCDKEGTGFITAGDFRNIMM 253
           V +PEF     + + +   E   EAFK  D++G G ITA +F+  M+
Sbjct: 82  VEFPEFCVMMKRIMKETDSEMIREAFKIFDRDGNGVITANEFKLFMI 128


>AB079299-1|BAB84566.1|  160|Caenorhabditis elegans troponin C
           protein.
          Length = 160

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +2

Query: 167 EEYGVEAFKKCDKEGTGFITAGDFRNIM 250
           EE   EAF+  DKEG G+I   D R+I+
Sbjct: 94  EEELREAFRLYDKEGNGYINVSDLRDIL 121


>U55364-9|AAA97974.1|  141|Caenorhabditis elegans Hypothetical
           protein F21C10.6 protein.
          Length = 141

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/64 (28%), Positives = 26/64 (40%)
 Frame = +1

Query: 160 LPRRIRSRSVQEMRQGRHRIHHSRRLQKYYDVVKSHLLTKDLKSKVITASGFPQGERKIS 339
           +P  +   S    R   HR   S R   +    K+H+L    +SKVI     P    KI 
Sbjct: 13  VPGILTQNSASLNRHQGHRTSSSFRHSAFTKSAKTHVLQHSTRSKVIITPSLPIKYNKIK 72

Query: 340 FPYY 351
           + +Y
Sbjct: 73  YYWY 76


>AL023830-2|CAA19473.1|  413|Caenorhabditis elegans Hypothetical
           protein Y26E6A.2 protein.
          Length = 413

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 322 GERKISFPYYMAFNSLLNNMELIKRVYLNATNGHR 426
           GER  S  +++  N  LNN++  ++   +  NGHR
Sbjct: 321 GERLFSAKHFVNINCALNNIDTFRKALRDWDNGHR 355


>U97005-12|AAB52289.1| 1121|Caenorhabditis elegans Hypothetical
            protein F19F10.11a protein.
          Length = 1121

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = -2

Query: 605  SCNLLEVLLWRYGVQIVVHNATICMVQNVAQVDNMSTSRGVI*LIIWAECRNSSLVTS 432
            S  LL+ + +++ V+ +     +C + N  + D MS SR    L  W +CR   L  S
Sbjct: 984  SAQLLKCISYKFTVKYLQKTCAMCDL-NFYRKDMMSISREAWALAQWIDCRKLELTDS 1040


>AF039717-3|AAK82917.1|  530|Caenorhabditis elegans Abnormal dauer
           formation protein16, isoform a protein.
          Length = 530

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -2

Query: 140 TQGRLRAASYPCRSTGERTCSPC*RAASCGGPFFA*PRRIRQK 12
           T G++ AAS PC S+G  T       +  GGP  A  +R R+K
Sbjct: 110 TVGQMLAASVPCSSSG-MTLGMSLNLSQGGGPMPAKKKRCRKK 151


>AF020344-1|AAB84392.1|  530|Caenorhabditis elegans fork
           head-related transcriptionfactor DAF-16b protein.
          Length = 530

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -2

Query: 140 TQGRLRAASYPCRSTGERTCSPC*RAASCGGPFFA*PRRIRQK 12
           T G++ AAS PC S+G  T       +  GGP  A  +R R+K
Sbjct: 110 TVGQMLAASVPCSSSG-MTLGMSLNLSQGGGPMPAKKKRCRKK 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,244,098
Number of Sequences: 27780
Number of extensions: 372145
Number of successful extensions: 1252
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)