Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00084
         (629 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022970-4|AAB69898.1|  336|Caenorhabditis elegans Hypothetical ...    33   0.22 
AL110485-29|CAB60376.3|  732|Caenorhabditis elegans Hypothetical...    31   0.90 
Z74472-5|CAA98943.1|  802|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AF040661-11|AAG24210.1|  211|Caenorhabditis elegans Hypothetical...    29   3.6  
Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U23511-10|AAC46789.3|  260|Caenorhabditis elegans Hypothetical p...    28   6.3  
AB017106-1|BAA88837.1|  607|Caenorhabditis elegans Kinesin like ...    28   6.3  

>AF022970-4|AAB69898.1|  336|Caenorhabditis elegans Hypothetical
           protein F13A2.3 protein.
          Length = 336

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 102 RLTLHRSPTCSPILLDDSPDTLTENTPKSVTAAES*EENSRTSTHVTR 245
           R   H +  C PI  D++P T   NTP + T  E+ E+     ++ TR
Sbjct: 94  RAPRHINIKCEPISDDENPTTANSNTPTTPTTPENTEDPFEGPSYATR 141


>AL110485-29|CAB60376.3|  732|Caenorhabditis elegans Hypothetical
           protein Y46G5A.10 protein.
          Length = 732

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 102 RLTLHRSPTCSPILLDDSPDTLTENTPKSVTAAES*EENSRTSTHVT 242
           +L   RS T     +  SP ++T+N PK+ T+     EN +T  H T
Sbjct: 301 KLRPSRSDTILSRSVSTSPSSVTDNIPKTSTSRIPSSENPKTMEHTT 347


>Z74472-5|CAA98943.1|  802|Caenorhabditis elegans Hypothetical
           protein F23H12.5 protein.
          Length = 802

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = +1

Query: 295 SDVPPEHPADSESVALA-KDRHFQLYSKIAEEHAQHPHPYETSVPRQSAAVAEATLKHSE 471
           +++P      +  +AL    ++FQ + K+  E    P PY  +VP  S      T K  +
Sbjct: 415 TEIPQPSYLQNPRIALVTSQQNFQHFPKLMNEQRASPGPYFRTVPSPSEYDEPTTTKKPK 474

Query: 472 LFRV-IAEQHARIGRRER 522
           +  V I  +  +  RR R
Sbjct: 475 IVTVEITNKPLKKKRRNR 492


>AF040661-11|AAG24210.1|  211|Caenorhabditis elegans Hypothetical
           protein W10G11.15 protein.
          Length = 211

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 398 CWACSSAILEYSWKCLSLAKATDSESAGCSGG 303
           C A S+A    +WK +  ++A +SE  GC  G
Sbjct: 12  CLALSAADCPAAWKAILNSQAEESEDNGCEAG 43


>Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical
           protein F20C5.2b protein.
          Length = 1130

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +1

Query: 436 AAVAEATLKHSELFRVIAEQHARIGRRERLS*GRKKRNNTCRNLNSRP-IREDPKNFSIA 612
           A  A    + S+L R++ +      + E L  G  +  N  +N+ ++P I EDPK+  + 
Sbjct: 288 AKSAHIPYRDSKLTRLLQDSLGGNSKTETL--GTLRYANRAKNIKNQPKINEDPKDALLR 345

Query: 613 QFQ 621
           +FQ
Sbjct: 346 EFQ 348


>U23511-10|AAC46789.3|  260|Caenorhabditis elegans Hypothetical
           protein C32D5.1 protein.
          Length = 260

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 105 LTLHRSPTCSPILLDDS-PDTLTENTPKSVTAAES*EENSRTSTHVTRF 248
           +T  +S +C+ I L+ S P T +  TP S     + E+++    +VT F
Sbjct: 180 VTCQQSTSCTSIQLNSSAPSTCSAKTPNSTANLPTSEKHADIIAYVTNF 228


>AB017106-1|BAA88837.1|  607|Caenorhabditis elegans Kinesin like
           protein (klp-11) protein.
          Length = 607

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +1

Query: 436 AAVAEATLKHSELFRVIAEQHARIGRRERLS*GRKKRNNTCRNLNSRP-IREDPKNFSIA 612
           A  A    + S+L R++ +      + E L  G  +  N  +N+ ++P I EDPK+  + 
Sbjct: 251 AKSAHIPYRDSKLTRLLQDSLGGNSKTETL--GTLRYANRAKNIKNQPKINEDPKDALLR 308

Query: 613 QFQ 621
           +FQ
Sbjct: 309 EFQ 311


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,926,241
Number of Sequences: 27780
Number of extensions: 263452
Number of successful extensions: 1096
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)