Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00071
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41031-1|AAA82618.2|  562|Caenorhabditis elegans Abnormal cell l...    29   4.1  
U18385-1|AAA62505.1|  276|Caenorhabditis elegans collagen protein.     29   4.1  
AF133217-1|AAD24877.1|  583|Caenorhabditis elegans tyrosine kina...    29   4.1  
L23648-8|AAA28030.1|  503|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z36753-17|CAA85342.1|  821|Caenorhabditis elegans Hypothetical p...    27   9.6  
AF240692-1|AAF61239.1|  821|Caenorhabditis elegans LIN-5 protein.      27   9.6  

>U41031-1|AAA82618.2|  562|Caenorhabditis elegans Abnormal cell
           lineage protein 18 protein.
          Length = 562

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -3

Query: 259 CNLTAETLFSEIQEQHEAVLAAGLQDPGHAEVH-HVVVHNSLPTYNCVLGEIN 104
           C    +T  ++    H+ V  A       A +H + +VHN +   NC++ E+N
Sbjct: 377 CRHGDKTKGAQTLRTHQLVSLATQVSSAVAHIHKYRIVHNDIAARNCLIAEVN 429


>U18385-1|AAA62505.1|  276|Caenorhabditis elegans collagen protein.
          Length = 276

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 370 NNPNYI-FLHYNMQ*NFIHKQSFFSGEKLTKKNNFLIFST 486
           N PN + FLH+ +  NF  K  +FS   L     FLI++T
Sbjct: 236 NIPNCVLFLHFFLNCNFTCKSKYFSFSNLANFFFFLIWNT 275


>AF133217-1|AAD24877.1|  583|Caenorhabditis elegans tyrosine kinase
           receptor-relatedprotein precursor RYK protein.
          Length = 583

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -3

Query: 259 CNLTAETLFSEIQEQHEAVLAAGLQDPGHAEVH-HVVVHNSLPTYNCVLGEIN 104
           C    +T  ++    H+ V  A       A +H + +VHN +   NC++ E+N
Sbjct: 398 CRHGDKTKGAQTLRTHQLVSLATQVSSAVAHIHKYRIVHNDIAARNCLIAEVN 450


>L23648-8|AAA28030.1|  503|Caenorhabditis elegans Hypothetical
           protein F44B9.2 protein.
          Length = 503

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +2

Query: 77  KHPVKIEFKIYLTENTVIRWE-AVVHNNMMYLRVPGVLQSG 196
           ++  KIE   +L E T++R   ++ HN+ +YL V G + SG
Sbjct: 324 EYVAKIECPSWLAECTILRERLSIAHNDHLYLCVCGEIFSG 364


>Z36753-17|CAA85342.1|  821|Caenorhabditis elegans Hypothetical
           protein T09A5.10 protein.
          Length = 821

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 363 LWGQRRIRSQNLESHEHEGAQQGSAVGTTLQNADDAILQ 247
           LW +   +S N++   H+  ++  ++G+ LQNA   I Q
Sbjct: 486 LWNELNEKSLNVDKAVHKSNEEFQSMGSCLQNAKRQIEQ 524


>AF240692-1|AAF61239.1|  821|Caenorhabditis elegans LIN-5 protein.
          Length = 821

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 363 LWGQRRIRSQNLESHEHEGAQQGSAVGTTLQNADDAILQ 247
           LW +   +S N++   H+  ++  ++G+ LQNA   I Q
Sbjct: 486 LWNELNEKSLNVDKAVHKSNEEFQSMGSCLQNAKRQIEQ 524


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,691,263
Number of Sequences: 27780
Number of extensions: 298742
Number of successful extensions: 727
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)