Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00050
         (657 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024503-15|AAG24087.2|  289|Caenorhabditis elegans Serpentine r...    29   2.2  
U39653-4|AAL56624.1|  649|Caenorhabditis elegans Prion-like-(q/n...    29   3.8  
U21321-10|AAG00048.2|  325|Caenorhabditis elegans T box family p...    29   3.8  

>AF024503-15|AAG24087.2|  289|Caenorhabditis elegans Serpentine
           receptor, class x protein22 protein.
          Length = 289

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 277 KQSFLLIMVTFTGSINLNLTHPVVTSRAL 191
           KQSFL  M  F+G +  ++T P+VT+  L
Sbjct: 221 KQSFLQGMTIFSGQVTYHVTAPLVTNSVL 249


>U39653-4|AAL56624.1|  649|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
           isoform b protein.
          Length = 649

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 204 HLEHYTLALYLNDIAHLELPSHR-PRRILATKGSTSKLTHRHS 79
           H EH  L  +LN +    +P HR PR+ +  + ST +L +  S
Sbjct: 343 HSEHKQLQPFLNKLHTSSVPLHRLPRQTIFVQNSTVRLEYSSS 385


>U21321-10|AAG00048.2|  325|Caenorhabditis elegans T box family
           protein 35 protein.
          Length = 325

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 20/53 (37%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = -3

Query: 274 QSFLLIMVTFTGSINLNLTH--PVVTSRALYASTVSKRYCTFRIAQSPSSSNP 122
           Q  LLI   F         H  PV    AL     + RYC+ RIA   SS NP
Sbjct: 151 QPTLLIQKVFRDCFGCFQAHGPPVEIKFALLTFIATTRYCSRRIADIKSSLNP 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,569,845
Number of Sequences: 27780
Number of extensions: 298907
Number of successful extensions: 655
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)