Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00047
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...   122   2e-28
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    34   0.077
AC006633-1|AAK68374.1|  113|Caenorhabditis elegans Hypothetical ...    32   0.24 
U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical pr...    31   0.55 
Z68317-2|CAA92690.2|  980|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z82076-2|CAB04938.1|  360|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z69884-8|CAA93752.2|  582|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U41019-3|AAA82329.3|  531|Caenorhabditis elegans Sop-2 related (...    27   8.9  
AY090484-1|AAM11893.1|  582|Caenorhabditis elegans low-affinity ...    27   8.9  
AF022970-7|AAB69900.2|  322|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score =  122 bits (293), Expect = 2e-28
 Identities = 51/87 (58%), Positives = 71/87 (81%)
 Frame = +2

Query: 2   LTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHV 181
           +T  VK+R+V V GPRG ++++F+HL +++  +    L+V KWFG +KELAA+RTVCSH+
Sbjct: 16  VTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFGVRKELAAIRTVCSHI 75

Query: 182 ENMIKGVTKGFQYKMRAVYAHFPITVS 262
           +NMIKGVT GF+YKMR+VYAHFPI V+
Sbjct: 76  KNMIKGVTVGFRYKMRSVYAHFPINVT 102



 Score =  110 bits (264), Expect = 7e-25
 Identities = 51/81 (62%), Positives = 63/81 (77%)
 Frame = +1

Query: 268 EGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTT 447
           +GN  +EIRNFLGEK +RRV +  GV    S  QKDE+++EGN ++ VS +AA IQQST 
Sbjct: 105 DGNRTVEIRNFLGEKIVRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAARIQQSTA 164

Query: 448 VKNKDIRKFLDGLYVSEKTTV 510
           VK KDIRKFLDG+YVSEKTT+
Sbjct: 165 VKEKDIRKFLDGIYVSEKTTI 185


>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
           protein Y47G6A.29 protein.
          Length = 2460

 Score = 33.9 bits (74), Expect = 0.077
 Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
 Frame = +2

Query: 74  HLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVC---SHVENMIKGVT--KGFQYKMRAVY 238
           H+  D++++  +   ++ WF   ++L ++RT C   S ++  I  +T  KGF + M+A +
Sbjct: 361 HVKHDVKIILTKETCMDIWFMRGEQLESIRTRCGPLSSLDMSILWITTEKGFYWNMKAEF 420

Query: 239 AHFPITVS 262
            +F  T S
Sbjct: 421 LNFEATTS 428


>AC006633-1|AAK68374.1|  113|Caenorhabditis elegans Hypothetical
           protein F35B3.3 protein.
          Length = 113

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = -2

Query: 522 CHLAHS-CFLRYIKTIQELSDILILDCSRLLNESSRARDIFQR 397
           C+L ++ C LR IK +  L+ +L  + SRL N  SR RD+F++
Sbjct: 21  CYLPNNNCKLRQIKPVPNLTRLL--EESRLTNSLSRLRDVFKK 61


>U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical
           protein T20B12.3 protein.
          Length = 504

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 207 LVTPLIMFSTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCL 70
           L  P +++ + ++++LT   SFL   H  T+    F  R+S  +CL
Sbjct: 275 LTNPSLLYMSQKESILTLLDSFLSSTHLPTYITASFLKRLS--RCL 318


>Z68317-2|CAA92690.2|  980|Caenorhabditis elegans Hypothetical
           protein T01H3.2 protein.
          Length = 980

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 339 RCHLYPSDVFLTQEVTYLNN*ITLSGDTVMGK*AYTARI 223
           RC L   ++F +  +T LNN + + GD  + K   T+ I
Sbjct: 477 RCQLMQGELFRSVNITILNNNLQIYGDNSLSKSIDTSSI 515


>Z82076-2|CAB04938.1|  360|Caenorhabditis elegans Hypothetical
           protein W07G1.6 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -1

Query: 265 W*HSNGEVSIHSTHLVLEAFSYSFNHVLYM*TDCPHGGKLLFGS 134
           W + NG V +  TH+    F  S   ++   T  P    LLFGS
Sbjct: 85  WPYKNGLVLVEDTHMKFTNFETSDRTIMAHITKYPETTCLLFGS 128


>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
           protein M110.4b protein.
          Length = 1155

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 85  NSQVFEVPFENSAGPFNCHQTRFHMDR 5
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
           protein M110.4a protein.
          Length = 1156

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 85  NSQVFEVPFENSAGPFNCHQTRFHMDR 5
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


>Z69884-8|CAA93752.2|  582|Caenorhabditis elegans Hypothetical
           protein F31F6.6 protein.
          Length = 582

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -3

Query: 479 SKNFLISLFLTVVDC*MRAAELETSSKELPSMISSSFCFGELTTVTPGAI 330
           S   + S+F+ +V    R+ E++  +  LP  IS+SF F       P AI
Sbjct: 459 SNTVIASIFIPIVAELARSLEIDPLNFMLPVTISASFAFLLPVATPPNAI 508


>U41019-3|AAA82329.3|  531|Caenorhabditis elegans Sop-2 related
           (ectopic expressionof hox genes) protein 3 protein.
          Length = 531

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -2

Query: 132 NHFSTFRRRGFTMRMSTAKCLKFLLRTPRGPLTVTRRDFT 13
           NH   ++R+     M T K  +    TP G L +T  + T
Sbjct: 427 NHIPDYKRKDLLKSMDTLKFCEIFRPTPTGALQLTAAEVT 466


>AY090484-1|AAM11893.1|  582|Caenorhabditis elegans low-affinity
           dicarboxylate transporterINDY1 protein.
          Length = 582

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -3

Query: 479 SKNFLISLFLTVVDC*MRAAELETSSKELPSMISSSFCFGELTTVTPGAI 330
           S   + S+F+ +V    R+ E++  +  LP  IS+SF F       P AI
Sbjct: 459 SNTVIASIFIPIVAELARSLEIDPLNFMLPVTISASFAFLLPVATPPNAI 508


>AF022970-7|AAB69900.2|  322|Caenorhabditis elegans Hypothetical
           protein F13A2.6 protein.
          Length = 322

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 363 WRVNDSHTRCHLYPSD 316
           W V+D  T C+L+PSD
Sbjct: 71  WMVSDYDTSCYLFPSD 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,959,748
Number of Sequences: 27780
Number of extensions: 268476
Number of successful extensions: 662
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)