Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00039
(710 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 100 9e-22
U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical p... 61 9e-10
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 60 1e-09
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 60 2e-09
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 48 7e-06
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 38 0.007
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 36 0.029
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 36 0.038
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 36 0.038
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 35 0.050
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 35 0.050
Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical p... 33 0.20
Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical pr... 33 0.20
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 32 0.35
Z71181-10|CAA94901.2| 678|Caenorhabditis elegans Hypothetical p... 32 0.47
Z71177-11|CAA94873.2| 678|Caenorhabditis elegans Hypothetical p... 32 0.47
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 32 0.47
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 32 0.47
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 32 0.47
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 32 0.47
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 32 0.47
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 32 0.47
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 31 0.61
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 31 0.61
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 31 0.61
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 31 0.61
AF038623-3|AAB94153.2| 96|Caenorhabditis elegans Hypothetical ... 31 1.1
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 30 1.4
AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical ... 30 1.9
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z75552-9|CAA99945.2| 705|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z75551-6|CAA99937.2| 705|Caenorhabditis elegans Hypothetical pr... 29 2.5
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 29 2.5
Z82073-7|CAB04922.2| 327|Caenorhabditis elegans Hypothetical pr... 29 3.3
U40956-1|AAA81756.1| 516|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z68105-3|CAA92121.2| 442|Caenorhabditis elegans Hypothetical pr... 29 4.3
AL110490-7|CAD59175.1| 533|Caenorhabditis elegans Hypothetical ... 29 4.3
AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical ... 29 4.3
AC084197-23|AAM44389.1| 610|Caenorhabditis elegans Hypothetical... 29 4.3
Z73098-12|CAA97339.1| 452|Caenorhabditis elegans Hypothetical p... 28 5.7
Z49910-5|CAA90120.1| 411|Caenorhabditis elegans Hypothetical pr... 28 5.7
U41273-2|AAA82454.2| 306|Caenorhabditis elegans Hypothetical pr... 28 7.6
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 28 7.6
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 28 7.6
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 28 7.6
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 28 7.6
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 28 7.6
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 28 7.6
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 28 7.6
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 28 7.6
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 100 bits (240), Expect = 9e-22
Identities = 42/63 (66%), Positives = 54/63 (85%)
Frame = +2
Query: 509 NRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNKPGLSSTN 688
+RVTI C+++ GHPKGFAY+EF +K+ +Q A+AM +SL RGR IKV PKRTNKPG+S+TN
Sbjct: 105 SRVTIQCDRFSGHPKGFAYVEFTEKEGMQNALAMTDSLLRGRQIKVDPKRTNKPGMSTTN 164
Query: 689 RPP 697
RPP
Sbjct: 165 RPP 167
Score = 94.3 bits (224), Expect = 8e-20
Identities = 46/83 (55%), Positives = 62/83 (74%), Gaps = 1/83 (1%)
Frame = +3
Query: 267 DLAAIKARVREMEEEAEKLKQMQTEVDKQMSMG-SPPGLTSPLNMSIEEKIEADNRSVYV 443
DL+AI+ + E+EEE +KLK +Q E+ M++ S +S ++ EEK EAD +SVYV
Sbjct: 23 DLSAIEGDLNEIEEEQKKLKAIQNEMVGHMNLNTSSQSNSSQSLLTPEEKAEADAKSVYV 82
Query: 444 GNVDYGATAEELEQHFHGCGSIT 512
GNVDYGATAEE+EQHFHGCGS++
Sbjct: 83 GNVDYGATAEEIEQHFHGCGSVS 105
>U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical
protein EEED8.12 protein.
Length = 197
Score = 60.9 bits (141), Expect = 9e-10
Identities = 29/55 (52%), Positives = 36/55 (65%)
Frame = +2
Query: 512 RVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNKPGL 676
R TI +K+ K FAYIEF D S++ A+ M+ SLFR RPI V KRTN PG+
Sbjct: 89 RTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNIPGM 143
Score = 52.8 bits (121), Expect = 2e-07
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Frame = +3
Query: 297 EMEEEAEK--LKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATA 470
EME EAE L+Q+Q ++ K + + T EE+ D +SV++GNVD+ +T
Sbjct: 21 EMEIEAESAILEQIQNKMAKNLESAAYVPPTE------EEQKAIDAKSVFIGNVDFNSTI 74
Query: 471 EELEQHFHGCGSI 509
EE+E+HF GCG I
Sbjct: 75 EEVEEHFKGCGHI 87
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 60.5 bits (140), Expect = 1e-09
Identities = 28/58 (48%), Positives = 39/58 (67%)
Frame = +2
Query: 512 RVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNKPGLSST 685
RVTI +K+ G+ K FA++EF +SVQ A+ + ++FR R I V KRTNKPG+ T
Sbjct: 74 RVTIPKDKFTGYQKNFAFVEFQKLESVQLALVLSGTMFRNRKIMVTLKRTNKPGMGRT 131
Score = 46.8 bits (106), Expect = 2e-05
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +3
Query: 405 EEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSI 509
EE+ + D RSVYVGNVD+ +T E+E+HF CG +
Sbjct: 38 EEQEKTDARSVYVGNVDWKSTVSEIEEHFAVCGKV 72
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 59.7 bits (138), Expect = 2e-09
Identities = 28/55 (50%), Positives = 36/55 (65%)
Frame = +2
Query: 512 RVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNKPGL 676
+ TI +K+ K FAYIEF D S++ A+ M+ SLFR RPI V KRTN PG+
Sbjct: 83 KTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNIPGM 137
Score = 53.6 bits (123), Expect = 1e-07
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Frame = +3
Query: 297 EMEEEAEK--LKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATA 470
EME EAE L+Q+Q ++ K + + T EE+ D +SV++GNVD+ +T
Sbjct: 15 EMEIEAESAILQQIQNKMAKHLESAAYVPPTE------EEQKAIDAKSVFIGNVDFNSTI 68
Query: 471 EELEQHFHGCGSI 509
EE+E+HF GCG I
Sbjct: 69 EEIEEHFKGCGQI 81
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 48.0 bits (109), Expect = 7e-06
Identities = 21/47 (44%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Frame = +2
Query: 509 NRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-AMDESLFRGRPIKV 646
N V I+C++ G P+GFA+IEF ++ S Q A+ M+ + F GRP++V
Sbjct: 32 NNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRV 78
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 432 SVYVGNVDYGATAEELEQHFHGCGSITGLQ 521
SVYVGN + T EEL F G I ++
Sbjct: 6 SVYVGNAPFQTTEEELGNFFSSIGQINNVR 35
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +2
Query: 509 NRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESL-FRGRPIKV 646
+ V I+C++ G P+GFA++EF ++ + Q A+ + F GR ++V
Sbjct: 31 SNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRV 77
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 432 SVYVGNVDYGATAEELEQHFHGCGSITGLQ 521
SVYVGN + T ++L +F G+++ ++
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVR 34
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 35.9 bits (79), Expect = 0.029
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +2
Query: 509 NRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-AMDESLFRGRPIKV 646
N V I+ ++ G P+GFA++EF ++ Q A+ ++ F GR ++V
Sbjct: 33 NNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQLNGVAFNGRNLRV 79
Score = 31.5 bits (68), Expect = 0.61
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 432 SVYVGNVDYGATAEELEQHFHGCGSITGLQ 521
SVYVGNV Y T EE+ +F G + ++
Sbjct: 7 SVYVGNVPYQGTEEEIGNYFAAVGHVNNVR 36
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 35.5 bits (78), Expect = 0.038
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +2
Query: 515 VTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKV 646
V I+ + G KG Y+EF D++SV +A++ G P+++
Sbjct: 54 VRIITDSRTGRSKGICYVEFWDEESVPLGLALNGQRLMGAPLQI 97
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 35.5 bits (78), Expect = 0.038
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +2
Query: 515 VTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKV 646
V I+ + G KG Y+EF D++SV +A++ G P+++
Sbjct: 199 VRIITDSRTGRSKGICYVEFWDEESVPLGLALNGQRLMGAPLQI 242
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 35.1 bits (77), Expect = 0.050
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +2
Query: 506 YNRVTILCNKYD---GHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNK 667
Y V KYD G +GFA++EF + + A+A E +G+ ++V P ++ +
Sbjct: 52 YGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEVKPAKSRE 108
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 35.1 bits (77), Expect = 0.050
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +2
Query: 506 YNRVTILCNKYD---GHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNK 667
Y V KYD G +GFA++EF + + A+A E +G+ ++V P ++ +
Sbjct: 52 YGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEVKPAKSRE 108
>Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 539 DGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKR 658
D P +AY+EF + SV A+ D F+ RP+K+ R
Sbjct: 200 DALPCAYAYVEFSQQASVCNALQNDGFEFKERPLKIQHSR 239
>Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 539 DGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKR 658
D P +AY+EF + SV A+ D F+ RP+K+ R
Sbjct: 200 DALPCAYAYVEFSQQASVCNALQNDGFEFKERPLKIQHSR 239
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 32.3 bits (70), Expect = 0.35
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Frame = +2
Query: 509 NRVTILCNKYDGHPKGFAYIEFGDKDSVQTA-MAMDESLFRGRPIKVMP---KRTNK 667
+ V ++ +K G KGFA +EF ++ A A+D +F+GR + ++P KRT +
Sbjct: 306 SEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSALDGYVFKGRMMHILPGDEKRTKE 362
>Z71181-10|CAA94901.2| 678|Caenorhabditis elegans Hypothetical
protein K07C5.8 protein.
Length = 678
Score = 31.9 bits (69), Expect = 0.47
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +3
Query: 279 IKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDY 458
+K R R EE+E+ + +V K + PPG+ S ++ + +E++ + N Y
Sbjct: 254 VKRRSRTSTEESEE--KTSNDVQKNLETDVPPGIRSAIDAAAQEELPVRRQGRRSANFGY 311
Query: 459 G 461
G
Sbjct: 312 G 312
>Z71177-11|CAA94873.2| 678|Caenorhabditis elegans Hypothetical
protein K07C5.8 protein.
Length = 678
Score = 31.9 bits (69), Expect = 0.47
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +3
Query: 279 IKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDY 458
+K R R EE+E+ + +V K + PPG+ S ++ + +E++ + N Y
Sbjct: 254 VKRRSRTSTEESEE--KTSNDVQKNLETDVPPGIRSAIDAAAQEELPVRRQGRRSANFGY 311
Query: 459 G 461
G
Sbjct: 312 G 312
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 542 GHPKGFAYIEFGDKDSV-QTAMAMDESLFRGRPIKVMPKRTNK 667
G PKGF ++ F D+D+ Q +++S+ G K+ R K
Sbjct: 275 GKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQK 317
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 542 GHPKGFAYIEFGDKDSV-QTAMAMDESLFRGRPIKVMPKRTNK 667
G PKGF ++ F D+D+ Q +++S+ G K+ R K
Sbjct: 275 GKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQK 317
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 31.9 bits (69), Expect = 0.47
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +2
Query: 551 KGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNKP 670
K FA+IEF D MA D F G+ +KV R +P
Sbjct: 230 KNFAFIEFRSIDETTAGMAFDGINFMGQQLKVRRPRDYQP 269
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 31.9 bits (69), Expect = 0.47
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +2
Query: 551 KGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNKP 670
K FA+IEF D MA D F G+ +KV R +P
Sbjct: 230 KNFAFIEFRSIDETTAGMAFDGINFMGQQLKVRRPRDYQP 269
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 31.9 bits (69), Expect = 0.47
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +2
Query: 551 KGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNKP 670
K FA+IEF D MA D F G+ +KV R +P
Sbjct: 205 KNFAFIEFRSIDETTAGMAFDGINFMGQQLKVRRPRDYQP 244
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 31.9 bits (69), Expect = 0.47
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +2
Query: 551 KGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNKP 670
K FA+IEF D MA D F G+ +KV R +P
Sbjct: 208 KNFAFIEFRSIDETTAGMAFDGINFMGQQLKVRRPRDYQP 247
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 31.5 bits (68), Expect = 0.61
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +3
Query: 402 IEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSITGLQYYAISMMATQK 554
I + DN SVYVGN+ T +E+ Q F G IT ++ + + A K
Sbjct: 119 IYNQTSGDNTSVYVGNI-ASLTEDEIRQGFASFGRITEVRIFKMQGYAFVK 168
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 31.5 bits (68), Expect = 0.61
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +3
Query: 402 IEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSITGLQYYAISMMATQK 554
I + DN SVYVGN+ T +E+ Q F G IT ++ + + A K
Sbjct: 129 IYNQTSGDNTSVYVGNI-ASLTEDEIRQGFASFGRITEVRIFKMQGYAFVK 178
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 31.5 bits (68), Expect = 0.61
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +3
Query: 402 IEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSITGLQYYAISMMATQK 554
I + DN SVYVGN+ T +E+ Q F G IT ++ + + A K
Sbjct: 232 IYNQTSGDNTSVYVGNI-ASLTEDEIRQGFASFGRITEVRIFKMQGYAFVK 281
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 31.5 bits (68), Expect = 0.61
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +3
Query: 402 IEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSITGLQYYAISMMATQK 554
I + DN SVYVGN+ T +E+ Q F G IT ++ + + A K
Sbjct: 200 IYNQTSGDNTSVYVGNI-ASLTEDEIRQGFASFGRITEVRIFKMQGYAFVK 249
>AF038623-3|AAB94153.2| 96|Caenorhabditis elegans Hypothetical
protein T08B6.1 protein.
Length = 96
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 596 TAMAMDESLFRGRPIKVMPKRTNKPGLSST 685
+A+ + FR R + V KRTNKPG T
Sbjct: 27 SALVLSGFKFRNRKVTVTTKRTNKPGFGKT 56
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 417 EADNRSVYVGNVDYGATAEELEQHFHGCGSITGLQYY 527
+ADN SVYVGN+ T +L F G I ++ +
Sbjct: 233 KADNTSVYVGNISQQTTDADLRDLFSTYGDIAEVRIF 269
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 512 RVTILCNKYDGHPKGFAYIEFGDKDSVQTAMA 607
R+ I +K G PKGFA++ F +D A+A
Sbjct: 204 RIFIARDKVTGLPKGFAFVTFESRDDAARAIA 235
>AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical
protein Y43D4A.5 protein.
Length = 1648
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/53 (28%), Positives = 31/53 (58%)
Frame = +3
Query: 267 DLAAIKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEAD 425
DL ++ R ++E+ ++ + +T+V Q++ P T+P+ S E+KI+ D
Sbjct: 165 DLIEVQRTYRNLKEKWHRMMEEKTQVI-QVASELPTSSTTPVTSSNEQKIDID 216
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 405 EEKIEADNRSVYVGNVDYGATAEEL 479
+ K +NR VYVGN+ + AT +EL
Sbjct: 9 KRKRNVENRQVYVGNMPFDATEKEL 33
>Z75552-9|CAA99945.2| 705|Caenorhabditis elegans Hypothetical
protein W04D2.6a protein.
Length = 705
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +3
Query: 324 KQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCG 503
+Q Q V QM M PG +P S ++K D+ V+VGN+ + E + + + CG
Sbjct: 17 QQQQQIVFGQMRM---PGQHTPAQQSSQQK--PDSSPVFVGNISDKCSDEFIRKILNECG 71
Query: 504 SI 509
++
Sbjct: 72 NV 73
>Z75551-6|CAA99937.2| 705|Caenorhabditis elegans Hypothetical
protein W04D2.6a protein.
Length = 705
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +3
Query: 324 KQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCG 503
+Q Q V QM M PG +P S ++K D+ V+VGN+ + E + + + CG
Sbjct: 17 QQQQQIVFGQMRM---PGQHTPAQQSSQQK--PDSSPVFVGNISDKCSDEFIRKILNECG 71
Query: 504 SI 509
++
Sbjct: 72 NV 73
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +2
Query: 506 YNRVTILCNKYD--GHPKGFAYIEFGDKDSVQTA 601
Y ++ L +D G P+G+A+IE+ DK + TA
Sbjct: 127 YGKIKKLTMVHDEAGKPRGYAFIEYSDKAEMHTA 160
>Z82073-7|CAB04922.2| 327|Caenorhabditis elegans Hypothetical
protein W06D12.1 protein.
Length = 327
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +3
Query: 312 AEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGA 464
+ K++ + D+++S PPG P N + +K + + N DY A
Sbjct: 148 SSKMQNLDVMTDRKVSDDIPPGFPRPQNNTKLQKSQKFSTDAMTSNSDYSA 198
>U40956-1|AAA81756.1| 516|Caenorhabditis elegans Hypothetical
protein ZK402.5 protein.
Length = 516
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +3
Query: 294 REMEEEAEKLKQ-MQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVG 446
RE+EE +++K+ + T VDK++ G+ ++I KI+A YVG
Sbjct: 401 RELEELKQQIKKSIGTNVDKKILFAELRGVFEAFLITINRKIKATACPCYVG 452
>Z68105-3|CAA92121.2| 442|Caenorhabditis elegans Hypothetical
protein F13E6.4 protein.
Length = 442
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 504 IHNHESAAPAPQPWLHNQHYQH 439
++N +S+A P P HN H+QH
Sbjct: 112 VNNGQSSATVPHPSHHNVHHQH 133
>AL110490-7|CAD59175.1| 533|Caenorhabditis elegans Hypothetical
protein Y48B6A.6b protein.
Length = 533
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 288 RVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSP 389
R+++ EE E L Q Q +V Q+ PP TSP
Sbjct: 171 RMKKYTEEMESLVQKQVDVLDQIMSSPPPPPTSP 204
>AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical
protein Y48B6A.6a protein.
Length = 687
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 288 RVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSP 389
R+++ EE E L Q Q +V Q+ PP TSP
Sbjct: 171 RMKKYTEEMESLVQKQVDVLDQIMSSPPPPPTSP 204
>AC084197-23|AAM44389.1| 610|Caenorhabditis elegans Hypothetical
protein Y73B6BL.33 protein.
Length = 610
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 512 RVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKV 646
RV +C G P G AY+EF + + AM D R I+V
Sbjct: 91 RVKFVCTT--GRPNGEAYVEFKNTEEAGKAMENDRKEISNRYIEV 133
>Z73098-12|CAA97339.1| 452|Caenorhabditis elegans Hypothetical
protein T21C9.12 protein.
Length = 452
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +3
Query: 258 EAPDLAAIKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEE 410
E + A K+ V E + EKL+ +++ + + SPP +P + +I+E
Sbjct: 69 ETQEAIAFKSEVEEAPK-VEKLEVESPKIEAEKVLSSPPPAPAPTSSAIDE 118
>Z49910-5|CAA90120.1| 411|Caenorhabditis elegans Hypothetical
protein F44G4.4a protein.
Length = 411
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +2
Query: 533 KYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKV-MPKRTNKPGLSSTNR 691
K DG+ KGF ++ +A+ + + GR V +P +K G S +R
Sbjct: 207 KSDGNSKGFGFVRMSSVGEQNKVLAIPQHMIDGRRCDVKVPDGRDKQGRPSISR 260
>U41273-2|AAA82454.2| 306|Caenorhabditis elegans Hypothetical
protein C26B9.6 protein.
Length = 306
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/70 (27%), Positives = 27/70 (38%)
Frame = +2
Query: 494 WLWIYNRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNKPG 673
+LWIYN N Y+ H +IE K +T + + M K N+P
Sbjct: 10 YLWIYNDGNCKSNMYEFHKDLQEHIENSYKRKKKTCKVSIFGVTHTIDFEKMLKYRNRPN 69
Query: 674 LSSTNRPPRT 703
S R R+
Sbjct: 70 TSEVKRITRS 79
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 530 NKYDGHPKGFAYIEFGDKDSVQTAM-AMDESLFRGRPIKVMPKRTNKP 670
+KY KGF ++ F ++ + A+ D L GR ++V + ++P
Sbjct: 53 DKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGRELRVTLAKYDRP 100
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 530 NKYDGHPKGFAYIEFGDKDSVQTAM-AMDESLFRGRPIKVMPKRTNKP 670
+KY KGF ++ F ++ + A+ D L GR ++V + ++P
Sbjct: 53 DKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGRELRVTLAKYDRP 100
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 521 ILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRG 631
I+ +K P+GF ++ F D DSV + + G
Sbjct: 145 IILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNG 181
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +3
Query: 420 ADNRSVYVGNVDYGATAEELEQHFHGCGSITGLQYYAISMMATQKVLPTSNLATRIV 590
ADN SVYVGN+ +E+ + F G I ++ + I A K + A IV
Sbjct: 253 ADNTSVYVGNI-ANLGEDEIRRAFDRFGPINEVRTFKIQGYAFVKFETKESAARAIV 308
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 521 ILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRG 631
I+ +K P+GF ++ F D DSV + + G
Sbjct: 107 IILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNG 143
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 521 ILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRG 631
I+ +K P+GF ++ F D DSV + + G
Sbjct: 107 IILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNG 143
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 521 ILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRG 631
I+ +K P+GF ++ F D DSV + + G
Sbjct: 145 IILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNG 181
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 521 ILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRG 631
I+ +K P+GF ++ F D DSV + + G
Sbjct: 145 IILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNG 181
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,444,760
Number of Sequences: 27780
Number of extensions: 316719
Number of successful extensions: 1104
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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