Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00037
         (424 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106576-1|AAC78177.2|  664|Caenorhabditis elegans Hypothetical ...    44   5e-05
AC025716-7|AAK95888.1|  465|Caenorhabditis elegans Hypothetical ...    40   6e-04
AL132949-37|CAB70100.3|  285|Caenorhabditis elegans Hypothetical...    38   0.004
AL132949-4|CAB70101.2|  439|Caenorhabditis elegans Hypothetical ...    38   0.004
AC025721-9|AAK29904.3|  639|Caenorhabditis elegans Hypothetical ...    37   0.007
Z81109-1|CAB03245.1|  485|Caenorhabditis elegans Hypothetical pr...    28   2.4  
Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical pr...    27   4.2  
AF045646-8|AAK29830.1|  541|Caenorhabditis elegans Udp-glucurono...    27   7.3  
U56963-4|AAB38117.2|  316|Caenorhabditis elegans Serpentine rece...    26   9.7  
AF039035-2|AAB94162.1|  304|Caenorhabditis elegans Hypothetical ...    26   9.7  

>AF106576-1|AAC78177.2|  664|Caenorhabditis elegans Hypothetical
           protein W07E6.1 protein.
          Length = 664

 Score = 44.0 bits (99), Expect = 5e-05
 Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
 Frame = +1

Query: 1   APCSGLGQ--RPQLINMMSPKM-IKSYKFLQRKLISEAVKLLKVS----GKLVYSTCTVT 159
           APCSG G   + Q +        ++    +QR+LI  A+  L  +    G LVYSTC+V 
Sbjct: 383 APCSGTGVIWKDQSVKTSKDSQDVQRRHTMQRQLILSALDSLDANSPNGGYLVYSTCSVL 442

Query: 160 EDENEGLVSWVLEKFPC 210
            +ENE +V+++LE+  C
Sbjct: 443 VEENEAVVNFLLERRHC 459


>AC025716-7|AAK95888.1|  465|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.21 protein.
          Length = 465

 Score = 40.3 bits (90), Expect = 6e-04
 Identities = 16/35 (45%), Positives = 26/35 (74%)
 Frame = +1

Query: 79  LQRKLISEAVKLLKVSGKLVYSTCTVTEDENEGLV 183
           LQ K++  A++ +KV G +VYSTCT++  +NE +V
Sbjct: 367 LQTKILVNALRSVKVGGSVVYSTCTLSPSQNEAVV 401


>AL132949-37|CAB70100.3|  285|Caenorhabditis elegans Hypothetical
           protein Y53F4B.4a protein.
          Length = 285

 Score = 37.5 bits (83), Expect = 0.004
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
 Frame = +1

Query: 4   PCSGLGQRPQLINMMS----PKMIKSYKFLQRKLISEAVKLLKVSGKLVYSTCTVTEDEN 171
           PCSG G   ++  +       + ++  K LQ  ++  A+KL  +  + VYSTC+V E+EN
Sbjct: 161 PCSGSGIVKRMDEITGGNAEKERLEKLKNLQAMILKHALKLPGLK-RAVYSTCSVHEEEN 219

Query: 172 EGLVSWVL 195
           E +V  VL
Sbjct: 220 EQVVDEVL 227


>AL132949-4|CAB70101.2|  439|Caenorhabditis elegans Hypothetical
           protein Y53F4B.4b protein.
          Length = 439

 Score = 37.5 bits (83), Expect = 0.004
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
 Frame = +1

Query: 4   PCSGLGQRPQLINMMS----PKMIKSYKFLQRKLISEAVKLLKVSGKLVYSTCTVTEDEN 171
           PCSG G   ++  +       + ++  K LQ  ++  A+KL  +  + VYSTC+V E+EN
Sbjct: 315 PCSGSGIVKRMDEITGGNAEKERLEKLKNLQAMILKHALKLPGLK-RAVYSTCSVHEEEN 373

Query: 172 EGLVSWVL 195
           E +V  VL
Sbjct: 374 EQVVDEVL 381


>AC025721-9|AAK29904.3|  639|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.5 protein.
          Length = 639

 Score = 36.7 bits (81), Expect = 0.007
 Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
 Frame = +1

Query: 7   CSGLG---QRPQLINMMSPKMIKSYKFLQRKLISEAVKLLKVSGKLVYSTCTVTEDENEG 177
           CSG G   + P++    +P+       +Q  +  +  + LKV G++VYSTC++   E+E 
Sbjct: 260 CSGDGTLRKNPEIWKKWTPQDGLGLHRMQIAIARKGAQQLKVGGRMVYSTCSMNPIEDEA 319

Query: 178 LVSWVL 195
           +V+ +L
Sbjct: 320 VVAQLL 325


>Z81109-1|CAB03245.1|  485|Caenorhabditis elegans Hypothetical
           protein R10D12.1 protein.
          Length = 485

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -1

Query: 295 CTIFLCSSSRPKLGGQALREVVQQV*VLN-METFLAPMTPDLHFHLQLQYRY 143
           C +F       KLG   L++V     VL  + TFL P+   LHFHL +  R+
Sbjct: 101 CGVFPVIIGISKLG---LKKVFMTSGVLTAISTFLIPILAPLHFHLFIMLRF 149


>Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical
           protein F58E10.3a protein.
          Length = 561

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
 Frame = +1

Query: 31  QLIN-MMSPKMIKSYKFLQRKLISEAVKLLKVSGKLVYSTCTVTEDENEGLVSWVLEKF 204
           +L+N +M+ K  K+  F++ K   +A +L +   +  + T  +  D+N+G   WVL++F
Sbjct: 366 ELLNHIMNQKECKTIIFVETK--RKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEF 422


>AF045646-8|AAK29830.1|  541|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein52 protein.
          Length = 541

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -1

Query: 394 LFAVFVEAAMKNPILSRYISSAGRNASM 311
           +F  ++E A +NP+L R ++  G+N S+
Sbjct: 467 IFVEWIEFASRNPLLHRNLNLIGQNMSV 494


>U56963-4|AAB38117.2|  316|Caenorhabditis elegans Serpentine
           receptor, class v protein29 protein.
          Length = 316

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -3

Query: 419 FTSQIYLFI-ICRFR*GCYEKPYTISIYFI 333
           FT  +YL + +C  +  CY K Y  + Y I
Sbjct: 18  FTIPLYLMVLVCLLKLRCYSKTYVTTFYTI 47


>AF039035-2|AAB94162.1|  304|Caenorhabditis elegans Hypothetical
           protein C53A3.1 protein.
          Length = 304

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
 Frame = +1

Query: 1   APCSGLGQRPQLINMMSPKMIKSY------KFLQRKLISEAVKLLKVSGK 132
           A CSG       +  M P ++ S       KFLQ   I E +KL +VS K
Sbjct: 13  ANCSGNNNNRSSLIFMKPFVVNSLPYPAFRKFLQHLDIDEVIKLARVSHK 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,459,772
Number of Sequences: 27780
Number of extensions: 183405
Number of successful extensions: 417
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)