Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00034
(681 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M98552-5|AAA28207.1| 401|Caenorhabditis elegans Hypothetical pr... 109 1e-24
AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome al... 31 0.76
AF273780-1|AAG15129.1| 509|Caenorhabditis elegans nuclear recep... 29 4.1
Z35640-6|CAA84702.2| 1226|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z35639-9|CAA84700.2| 1226|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z82285-2|CAD56248.1| 622|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z82285-1|CAB05302.1| 634|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z68108-19|CAD44153.1| 1895|Caenorhabditis elegans Hypothetical p... 27 9.4
Z68108-18|CAB60299.4| 1868|Caenorhabditis elegans Hypothetical p... 27 9.4
Z68108-17|CAB60298.3| 1898|Caenorhabditis elegans Hypothetical p... 27 9.4
Z50740-6|CAD44124.1| 1895|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z50740-5|CAB60282.4| 1868|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z50740-4|CAB60281.3| 1898|Caenorhabditis elegans Hypothetical pr... 27 9.4
AL110485-7|CAB60355.1| 237|Caenorhabditis elegans Hypothetical ... 27 9.4
AF044576-1|AAC38963.1| 1898|Caenorhabditis elegans phospholipase... 27 9.4
>M98552-5|AAA28207.1| 401|Caenorhabditis elegans Hypothetical
protein ZK370.5 protein.
Length = 401
Score = 109 bits (263), Expect = 1e-24
Identities = 55/102 (53%), Positives = 72/102 (70%), Gaps = 4/102 (3%)
Frame = +3
Query: 261 DAYENARFLCDRYYLASPELEV-LQDGVSSLRPMPIVYVPSHLYHMLFELFKNAMRAVME 437
DA+ENARFLCDRYYL SP +++ + + V +P+ IV VPSHLYHM+FELFKNAMRA +E
Sbjct: 199 DAFENARFLCDRYYLTSPSMKLEMHNAVEKGKPISIVAVPSHLYHMMFELFKNAMRATVE 258
Query: 438 NHGTAP--PPIQVNLVNGKEDISVKIL-IAAAASRAVSELLF 554
HG P I+V +V G+ED+S+KI SR + E L+
Sbjct: 259 YHGVDDDLPDIKVYVVKGQEDLSIKICDRGGGVSRTILERLY 300
Score = 67.7 bits (158), Expect = 7e-12
Identities = 35/67 (52%), Positives = 44/67 (65%)
Frame = +1
Query: 58 DPGTENSIQYFLDRFYMSRISIRMLINQHTLLFGEQLGGKQASVNGIGNGGRHIGSIDPA 237
D +E IQYFLDRFY++RISIRML NQH ++FG N + RH+G IDPA
Sbjct: 141 DIASEKGIQYFLDRFYINRISIRMLQNQHLVVFG----------NVLPESPRHVGCIDPA 190
Query: 238 CDVVAVL 258
CDV +V+
Sbjct: 191 CDVESVV 197
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = +1
Query: 553 FKYMYSTAPQPSKSDSHTVPLAGYGYGLP 639
+ YMYSTAP P + D PLAGYGYGLP
Sbjct: 300 YNYMYSTAPPPPR-DGTQAPLAGYGYGLP 327
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2
Query: 632 GCLISRLYARYFHGDL 679
G +SRLYARYF GDL
Sbjct: 325 GLPLSRLYARYFLGDL 340
>AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome alpha
subunit protein 6 protein.
Length = 260
Score = 31.1 bits (67), Expect = 0.76
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +1
Query: 118 SIRMLINQHTLLFGEQLGGKQASVNGIGNGGRHIGSIDPACDVVAVLGTLTRTQGSSA 291
S+++ + +T +G + G + G G HI DP+ +VV++ GT + SA
Sbjct: 111 SMQLKLQANTQYYGRRPFGVGILIAGYDKDGAHIIQTDPSAEVVSMHGTSIGARSQSA 168
>AF273780-1|AAG15129.1| 509|Caenorhabditis elegans nuclear receptor
NHR-34 protein.
Length = 509
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +1
Query: 115 ISIRMLINQHTLLFGEQLGGKQASVNGIGNGGRHIGSIDPACD 243
I ++M ++ ++L GE+ G + V G GRH G+I AC+
Sbjct: 7 IFLKMAESKFSILKGEEFTGLKCRVCGDSRAGRHYGTI--ACN 47
>Z35640-6|CAA84702.2| 1226|Caenorhabditis elegans Hypothetical protein
F43D9.1 protein.
Length = 1226
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 256 TRPRRHRPGLWSRCDGHHCRSH*PTP 179
T PRR +PG R + HH S P P
Sbjct: 1167 TSPRRQQPGSMRRPNNHHSGSQNPRP 1192
>Z35639-9|CAA84700.2| 1226|Caenorhabditis elegans Hypothetical protein
F43D9.1 protein.
Length = 1226
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 256 TRPRRHRPGLWSRCDGHHCRSH*PTP 179
T PRR +PG R + HH S P P
Sbjct: 1167 TSPRRQQPGSMRRPNNHHSGSQNPRP 1192
>Z82285-2|CAD56248.1| 622|Caenorhabditis elegans Hypothetical
protein T28F3.1b protein.
Length = 622
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 592 SDSHTVPLAGYGYGLPNLASVRAVFP 669
+ S T G+G LPN +SV A+FP
Sbjct: 372 NSSKTFEAFGFGAKLPNQSSVSAIFP 397
>Z82285-1|CAB05302.1| 634|Caenorhabditis elegans Hypothetical
protein T28F3.1a protein.
Length = 634
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 592 SDSHTVPLAGYGYGLPNLASVRAVFP 669
+ S T G+G LPN +SV A+FP
Sbjct: 384 NSSKTFEAFGFGAKLPNQSSVSAIFP 409
>Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical
protein F53B6.2a protein.
Length = 1045
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -3
Query: 229 LWSRCDGHHCRSH*PTPACRQAARQTTECAG**ASE*ISDSCRICPG 89
LW DG C++ C + + Q C G +S D+C +C G
Sbjct: 107 LWRVDDGTPCQAATSRAVCSKGSCQIVGCDGLISSSFRFDACGVCGG 153
>Z68108-19|CAD44153.1| 1895|Caenorhabditis elegans Hypothetical
protein F31B12.1c protein.
Length = 1895
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 520 RRHPAQCRSFCFKYMYSTAPQPSKSDSHTV-PLAGYGYGLPNLA 648
+RHPA+C S+ ++ T P DS P+ + +G+ +A
Sbjct: 1310 KRHPAKCVSYTRDHLIRTYPSAKHYDSSNFNPINCWAHGMQMVA 1353
>Z68108-18|CAB60299.4| 1868|Caenorhabditis elegans Hypothetical
protein F31B12.1b protein.
Length = 1868
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 520 RRHPAQCRSFCFKYMYSTAPQPSKSDSHTV-PLAGYGYGLPNLA 648
+RHPA+C S+ ++ T P DS P+ + +G+ +A
Sbjct: 1310 KRHPAKCVSYTRDHLIRTYPSAKHYDSSNFNPINCWAHGMQMVA 1353
>Z68108-17|CAB60298.3| 1898|Caenorhabditis elegans Hypothetical
protein F31B12.1a protein.
Length = 1898
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 520 RRHPAQCRSFCFKYMYSTAPQPSKSDSHTV-PLAGYGYGLPNLA 648
+RHPA+C S+ ++ T P DS P+ + +G+ +A
Sbjct: 1310 KRHPAKCVSYTRDHLIRTYPSAKHYDSSNFNPINCWAHGMQMVA 1353
>Z50740-6|CAD44124.1| 1895|Caenorhabditis elegans Hypothetical protein
F31B12.1c protein.
Length = 1895
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 520 RRHPAQCRSFCFKYMYSTAPQPSKSDSHTV-PLAGYGYGLPNLA 648
+RHPA+C S+ ++ T P DS P+ + +G+ +A
Sbjct: 1310 KRHPAKCVSYTRDHLIRTYPSAKHYDSSNFNPINCWAHGMQMVA 1353
>Z50740-5|CAB60282.4| 1868|Caenorhabditis elegans Hypothetical protein
F31B12.1b protein.
Length = 1868
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 520 RRHPAQCRSFCFKYMYSTAPQPSKSDSHTV-PLAGYGYGLPNLA 648
+RHPA+C S+ ++ T P DS P+ + +G+ +A
Sbjct: 1310 KRHPAKCVSYTRDHLIRTYPSAKHYDSSNFNPINCWAHGMQMVA 1353
>Z50740-4|CAB60281.3| 1898|Caenorhabditis elegans Hypothetical protein
F31B12.1a protein.
Length = 1898
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 520 RRHPAQCRSFCFKYMYSTAPQPSKSDSHTV-PLAGYGYGLPNLA 648
+RHPA+C S+ ++ T P DS P+ + +G+ +A
Sbjct: 1310 KRHPAKCVSYTRDHLIRTYPSAKHYDSSNFNPINCWAHGMQMVA 1353
>AL110485-7|CAB60355.1| 237|Caenorhabditis elegans Hypothetical
protein Y46G5A.12 protein.
Length = 237
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 157 GEQLGGKQASVNGIGNGGRHIGS 225
GE++GG+QA G G+GG H G+
Sbjct: 193 GERIGGRQAVAAG-GSGGAHHGA 214
>AF044576-1|AAC38963.1| 1898|Caenorhabditis elegans phospholipase C
PLC210 protein.
Length = 1898
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 520 RRHPAQCRSFCFKYMYSTAPQPSKSDSHTV-PLAGYGYGLPNLA 648
+RHPA+C S+ ++ T P DS P+ + +G+ +A
Sbjct: 1310 KRHPAKCVSYTRDHLIRTYPSAKHYDSSNFNPINCWAHGMQMVA 1353
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,480,263
Number of Sequences: 27780
Number of extensions: 364232
Number of successful extensions: 1088
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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