Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0108
(498 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 84 6e-17
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 84 6e-17
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 39 0.002
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 39 0.002
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 38 0.004
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 38 0.004
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 38 0.004
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 38 0.004
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 37 0.007
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 36 0.012
U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical p... 36 0.012
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 36 0.016
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 36 0.022
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 34 0.066
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 33 0.087
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 33 0.12
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 33 0.12
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 33 0.12
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 33 0.15
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 32 0.27
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 32 0.27
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 31 0.46
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 31 0.46
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 31 0.61
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 31 0.61
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 30 0.81
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 30 0.81
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 30 0.81
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 30 0.81
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 29 1.9
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 29 1.9
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 29 2.5
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 29 2.5
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 29 2.5
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 29 2.5
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 29 2.5
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 29 2.5
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 29 2.5
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 29 2.5
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 29 2.5
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 29 2.5
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 29 2.5
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 29 2.5
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 27 5.7
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 27 7.6
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 27 7.6
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 83.8 bits (198), Expect = 6e-17
Identities = 33/53 (62%), Positives = 46/53 (86%)
Frame = +1
Query: 94 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
R P I+G+ SLK+DNL+Y+TTP DLRR FER G++GD++IPRD+Y+R+S+GF
Sbjct: 10 RAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGF 62
Score = 34.7 bits (76), Expect = 0.038
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +3
Query: 279 DAXEALDTMDGRMXDGRELRVQMA 350
DA ALD DG++ DGRELRV +A
Sbjct: 72 DAEHALDRTDGKLVDGRELRVTLA 95
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 83.8 bits (198), Expect = 6e-17
Identities = 33/53 (62%), Positives = 46/53 (86%)
Frame = +1
Query: 94 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
R P I+G+ SLK+DNL+Y+TTP DLRR FER G++GD++IPRD+Y+R+S+GF
Sbjct: 10 RAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGF 62
Score = 34.7 bits (76), Expect = 0.038
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +3
Query: 279 DAXEALDTMDGRMXDGRELRVQMA 350
DA ALD DG++ DGRELRV +A
Sbjct: 72 DAEHALDRTDGKLVDGRELRVTLA 95
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 38.7 bits (86), Expect = 0.002
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
+ L+++TT E+LR F R GEV + + RD T+ +RGF
Sbjct: 49 IGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGF 88
Score = 31.5 bits (68), Expect = 0.35
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
+ L+ +T ED+++ FE G+V D + D+ T+ RGF
Sbjct: 138 IGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGF 177
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 38.7 bits (86), Expect = 0.002
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
+ L+++TT E+LR F R GEV + + RD T+ +RGF
Sbjct: 49 IGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGF 88
Score = 31.5 bits (68), Expect = 0.35
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
+ L+ +T ED+++ FE G+V D + D+ T+ RGF
Sbjct: 138 IGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGF 177
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 37.9 bits (84), Expect = 0.004
Identities = 13/44 (29%), Positives = 29/44 (65%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
S+ + N+ + +T E++ F+ CG++ IP+D++T++ + FA
Sbjct: 56 SVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFA 99
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 37.9 bits (84), Expect = 0.004
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFS 270
V LT TT + +R + + GE+ DI + RD T+ SRGF FS
Sbjct: 27 VGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFS 72
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 37.9 bits (84), Expect = 0.004
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFS 270
V LT TT + +R + + GE+ DI + RD T+ SRGF FS
Sbjct: 27 VGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFS 72
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 37.9 bits (84), Expect = 0.004
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFS 270
V LT TT + +R + + GE+ DI + RD T+ SRGF FS
Sbjct: 27 VGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFS 72
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 37.1 bits (82), Expect = 0.007
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
S+ V N ++TT +DL F + G V ++ I DR T RGFA
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFA 48
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 36.3 bits (80), Expect = 0.012
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
S+ V N+ Y T E++ + F CG V + I DR++ +GFA
Sbjct: 79 SVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFA 122
>U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical
protein EEED8.12 protein.
Length = 197
Score = 36.3 bits (80), Expect = 0.012
Identities = 13/44 (29%), Positives = 28/44 (63%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
S+ + N+ + +T E++ F+ CG + IP+D++T++ + FA
Sbjct: 62 SVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFA 105
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 35.9 bits (79), Expect = 0.016
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
S+ V N+ +++T ++ F CG+V + IP+D++T + FA
Sbjct: 47 SVYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQKNFA 90
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 35.5 bits (78), Expect = 0.022
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +1
Query: 139 NLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
NL Y T +DL+ +F++ GEV ++ + D+ T +GFA
Sbjct: 285 NLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFA 323
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 33.9 bits (74), Expect = 0.066
Identities = 19/42 (45%), Positives = 24/42 (57%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
L V NL+ TT +DLR VF GE+ + DR + SRGF
Sbjct: 78 LGVFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSGNSRGF 119
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 33.5 bits (73), Expect = 0.087
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V L Y T+ + L FE+ G++ + + DR T++SRG+
Sbjct: 39 VGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGY 78
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 33.1 bits (72), Expect = 0.12
Identities = 23/61 (37%), Positives = 34/61 (55%)
Frame = +1
Query: 112 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFSXVVTLKK 291
DG L V N+ +R DL+ +FE+ G V D+ I + R S+GF GF VT+++
Sbjct: 150 DGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNE--RGSKGF---GF---VTMER 201
Query: 292 P 294
P
Sbjct: 202 P 202
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 33.1 bits (72), Expect = 0.12
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
+ L+Y + D+ VF + GEV +I + RD+ T +S+GFA
Sbjct: 42 IGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFA 82
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 33.1 bits (72), Expect = 0.12
Identities = 23/61 (37%), Positives = 34/61 (55%)
Frame = +1
Query: 112 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFSXVVTLKK 291
DG L V N+ +R DL+ +FE+ G V D+ I + R S+GF GF VT+++
Sbjct: 150 DGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNE--RGSKGF---GF---VTMER 201
Query: 292 P 294
P
Sbjct: 202 P 202
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 32.7 bits (71), Expect = 0.15
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 130 KVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
+V NL ++LR +F + G V I+I RD+ T +GFA
Sbjct: 179 RVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFA 220
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 31.9 bits (69), Expect = 0.27
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 163 EDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
+DLR FE+ G+V DI P D+ T+ R FA
Sbjct: 124 QDLRSHFEQFGKVDDIEWPFDKQTKARRNFA 154
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
V ++ EDL F + GEV + DR SRGFA
Sbjct: 33 VGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFA 73
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 31.9 bits (69), Expect = 0.27
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 163 EDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
+DLR FE+ G+V DI P D+ T+ R FA
Sbjct: 124 QDLRSHFEQFGKVDDIEWPFDKQTKARRNFA 154
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
V ++ EDL F + GEV + DR SRGFA
Sbjct: 33 VGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFA 73
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 31.1 bits (67), Expect = 0.46
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 169 LRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFS 270
+R + + GE+ DI + RD T+ SRGF FS
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFS 34
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 31.1 bits (67), Expect = 0.46
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 169 LRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFS 270
+R + + GE+ DI + RD T+ SRGF FS
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFS 34
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 30.7 bits (66), Expect = 0.61
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +1
Query: 100 PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
P + + L V + +DLR +FE+ G++ + I +D+YT +G A
Sbjct: 22 PVKDPDAIKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCA 73
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 30.7 bits (66), Expect = 0.61
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +1
Query: 100 PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
P + + L V + +DLR +FE+ G++ + I +D+YT +G A
Sbjct: 22 PVKDPDAIKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCA 73
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 30.3 bits (65), Expect = 0.81
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 154 TTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
TT EDL +F R G++ + I RDR + +S +A
Sbjct: 252 TTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYA 285
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 30.3 bits (65), Expect = 0.81
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 154 TTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
TT EDL +F R G++ + I RDR + +S +A
Sbjct: 252 TTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYA 285
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 30.3 bits (65), Expect = 0.81
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 154 TTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
TT EDL +F R G++ + I RDR + +S +A
Sbjct: 183 TTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYA 216
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 30.3 bits (65), Expect = 0.81
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
+L V NL+Y T + + +F R G+V + + DR+ + GF
Sbjct: 38 TLYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGF 80
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 29.1 bits (62), Expect = 1.9
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +1
Query: 112 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFSXVVTLKK 291
DG L V N+ ++ DL +FE+ G V D+ I + R S+GF GF VT++
Sbjct: 97 DGPRRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNE--RGSKGF---GF---VTMQN 148
Query: 292 P 294
P
Sbjct: 149 P 149
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 29.1 bits (62), Expect = 1.9
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +1
Query: 112 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFSXVVTLKK 291
DG L V N+ ++ DL +FE+ G V D+ I + R S+GF GF VT++
Sbjct: 97 DGPRRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNE--RGSKGF---GF---VTMQN 148
Query: 292 P 294
P
Sbjct: 149 P 149
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +1
Query: 112 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
+ +L ++ L T E++R +F GE+ + RD+ T +S G+
Sbjct: 39 ESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGY 85
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 121 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRG 249
+ + V + + D RR+FE+ G V I RD+ T+ S+G
Sbjct: 55 IKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKG 97
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 121 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRG 249
+ + V + + D RR+FE+ G V I RD+ T+ S+G
Sbjct: 55 IKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKG 97
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V +L+ + LR F+ G+V D + RD T +S+G+
Sbjct: 26 VGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGY 65
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V +L+ + LR F+ G+V D + RD T +S+G+
Sbjct: 36 VGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGY 75
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V +L+ + LR F+ G+V D + RD T +S+G+
Sbjct: 139 VGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGY 178
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V +L+ + LR F+ G+V D + RD T +S+G+
Sbjct: 107 VGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGY 146
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 121 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRG 249
+ + V + + D RR+FE+ G V I RD+ T+ S+G
Sbjct: 55 IKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKG 97
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 121 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRG 249
+ + V + + D RR+FE+ G V I RD+ T+ S+G
Sbjct: 55 IKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKG 97
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 121 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRG 249
+ + V + + D RR+FE+ G V I RD+ T+ S+G
Sbjct: 55 IKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKG 97
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 121 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRG 249
+ + V + + D RR+FE+ G V I RD+ T+ S+G
Sbjct: 55 IKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKG 97
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 121 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRG 249
+ + V + + D RR+FE+ G V I RD+ T+ S+G
Sbjct: 55 IKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKG 97
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V +L+ + E L+ F + GEV + + RD T++S+G+
Sbjct: 139 VGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGY 178
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRG 249
+L + + T P DL F G V D+ I D T S+G
Sbjct: 26 TLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKG 67
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRG 249
+L + + T P DL F G V D+ I D T S+G
Sbjct: 171 TLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKG 212
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,410,304
Number of Sequences: 27780
Number of extensions: 172721
Number of successful extensions: 414
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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