Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30268.Seq
         (625 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical pr...   105   3e-23
AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal pro...   105   3e-23
AF039710-7|AAB96687.1|  123|Caenorhabditis elegans Hypothetical ...    29   3.6  

>Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical
           protein T05F1.3 protein.
          Length = 146

 Score =  105 bits (252), Expect = 3e-23
 Identities = 50/96 (52%), Positives = 65/96 (67%), Gaps = 3/96 (3%)
 Frame = -2

Query: 507 SVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILR 328
           + ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP DPDWFY R A++ R
Sbjct: 4   ATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLAR 63

Query: 327 HIYIRSPVGVKTVTKIFGGRKRNGV---HLHISAGH 229
           H+Y R P G+    K++GG KR GV   H   SAG+
Sbjct: 64  HLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGN 98



 Score = 58.0 bits (134), Expect = 5e-09
 Identities = 29/47 (61%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
 Frame = -1

Query: 250 PSHFCRSSGSIARKALQSLEALKLVEKVQDG-GRILTTQGRRDLDRI 113
           P+HF  S+G+  RKA+Q LE +K VEK  DG GRIL+ QGR+DLDRI
Sbjct: 89  PNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRILSKQGRKDLDRI 135


>AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal
           protein S19 protein.
          Length = 146

 Score =  105 bits (252), Expect = 3e-23
 Identities = 50/96 (52%), Positives = 65/96 (67%), Gaps = 3/96 (3%)
 Frame = -2

Query: 507 SVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILR 328
           + ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP DPDWFY R A++ R
Sbjct: 4   ATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLAR 63

Query: 327 HIYIRSPVGVKTVTKIFGGRKRNGV---HLHISAGH 229
           H+Y R P G+    K++GG KR GV   H   SAG+
Sbjct: 64  HLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGN 98



 Score = 58.0 bits (134), Expect = 5e-09
 Identities = 29/47 (61%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
 Frame = -1

Query: 250 PSHFCRSSGSIARKALQSLEALKLVEKVQDG-GRILTTQGRRDLDRI 113
           P+HF  S+G+  RKA+Q LE +K VEK  DG GRIL+ QGR+DLDRI
Sbjct: 89  PNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRILSKQGRKDLDRI 135


>AF039710-7|AAB96687.1|  123|Caenorhabditis elegans Hypothetical
           protein C46E10.2 protein.
          Length = 123

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -3

Query: 359 GSMCVVLPSFVIFTFAHLLESRLSPRSSVGANVMEYTFTFLQVIR 225
           GS   +L + ++F F HL+ +R+S + S    ++ Y F    ++R
Sbjct: 72  GSGMAILVT-IVFRFIHLIGNRISKKQSTLLIILSYIFPVYNLVR 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,992,694
Number of Sequences: 27780
Number of extensions: 233344
Number of successful extensions: 606
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)