Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30255.Seq
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024494-9|AAB70333.1|  336|Caenorhabditis elegans Serpentine re...    31   0.46 
AF125442-7|AAD12796.1|  203|Caenorhabditis elegans Hypothetical ...    28   4.3  
Z81584-9|CAB04680.2|  334|Caenorhabditis elegans Hypothetical pr...    27   10.0 
Z81584-2|CAE53738.1|  298|Caenorhabditis elegans Hypothetical pr...    27   10.0 
AF024494-12|AAB70332.3|  332|Caenorhabditis elegans Serpentine r...    27   10.0 

>AF024494-9|AAB70333.1|  336|Caenorhabditis elegans Serpentine
           receptor, class u protein27 protein.
          Length = 336

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +1

Query: 235 MFIVAFFYYIFISTSSLAV--CLDLNNSHYRRPLFISTYYAS 354
           +F +  F YI + T+ +    C  ++ +HY   L+ISTYY +
Sbjct: 82  LFFIFDFVYIRLMTTGMFTSWCASVSPNHYLMVLYISTYYVN 123


>AF125442-7|AAD12796.1|  203|Caenorhabditis elegans Hypothetical
           protein H04M03.11 protein.
          Length = 203

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -3

Query: 148 HLNYSLLGRYF--YLSGGLSV*LKILQFVLKLMI*IRQSDHS 29
           H NY+    YF  Y+ GG+ V L ++  VL + I   + DHS
Sbjct: 43  HENYNRKSSYFLHYILGGILVVLCLISIVLFIKICEMKKDHS 84


>Z81584-9|CAB04680.2|  334|Caenorhabditis elegans Hypothetical
           protein T04C12.2a protein.
          Length = 334

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 229 ISMFIVAFFYYIFISTSSLAVCLDLNNSHYRRPLFIST 342
           +  F +   YY++IST   A+ +  N   ++R  F+ T
Sbjct: 227 LGFFTICCIYYLYIST---AIMISSNTRKFQRSFFLGT 261


>Z81584-2|CAE53738.1|  298|Caenorhabditis elegans Hypothetical
           protein T04C12.2b protein.
          Length = 298

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 229 ISMFIVAFFYYIFISTSSLAVCLDLNNSHYRRPLFIST 342
           +  F +   YY++IST   A+ +  N   ++R  F+ T
Sbjct: 191 LGFFTICCIYYLYIST---AIMISSNTRKFQRSFFLGT 225


>AF024494-12|AAB70332.3|  332|Caenorhabditis elegans Serpentine
           receptor, class u protein28 protein.
          Length = 332

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +1

Query: 217 FPCIISMFIVAFFYYIFISTSSLAV--CLDLNNSHYRRPLFISTYYAS 354
           F C++  F +  F +I + T+ +    C     +HY   L+I+TYY +
Sbjct: 80  FTCLL--FFIFDFVHIRLMTTGIFTSWCASSAPNHYIMALYIATYYVN 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,005,505
Number of Sequences: 27780
Number of extensions: 141575
Number of successful extensions: 269
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)