Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30212.Seq
         (759 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule los...    33   0.22 
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    30   2.1  
AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical ...    30   2.1  
Z82080-8|CAD92382.3|  404|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AL032625-7|CAN86642.1|  404|Caenorhabditis elegans Hypothetical ...    29   2.7  
AL023854-1|CAH60790.2|  404|Caenorhabditis elegans Hypothetical ...    29   2.7  
AC025716-18|AAT81178.1|  998|Caenorhabditis elegans Hypothetical...    29   2.7  
Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U37430-2|AAL08045.2|  802|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AC025721-10|AAK29908.2| 1019|Caenorhabditis elegans Hypothetical...    28   6.3  
Z47074-1|CAA87375.2|  851|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule loss
           protein 4 protein.
          Length = 1392

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 568 LECEIKAVAAGRAHTIILTDKEGVYTLGN 654
           L C++  +A GRAHT++LTD   V   G+
Sbjct: 878 LICKVTQIACGRAHTVVLTDTGRVLVCGS 906


>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
           presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 514 HPLELLLSYAPIYIPYKSLECEIKAVAAGRAHTIILTDKEGVYTLGNN 657
           HP  ++LS  P  +   S+ C       G  HT++L     V+T G+N
Sbjct: 754 HPSRVILSQGPHDVKVSSVSC-------GNFHTVLLASDRRVFTFGSN 794


>AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical
           protein F07B7.12 protein.
          Length = 1900

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 514 HPLELLLSYAPIYIPYKSLECEIKAVAAGRAHTIILTDKEGVYTLGNN 657
           HP  ++LS  P  +   S+ C       G  HT++L     V+T G+N
Sbjct: 754 HPSRVILSQGPHDVKVSSVSC-------GNFHTVLLASDRRVFTFGSN 794


>Z82080-8|CAD92382.3|  404|Caenorhabditis elegans Hypothetical
           protein W09G3.7a protein.
          Length = 404

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
 Frame = +1

Query: 538 YAPIYIPYKSLEC---EIKAVAAGRAHTIILTDKEGVYTLGNN 657
           Y   YI  K +     EI  +++GRAH++I T+  GV+ +G+N
Sbjct: 107 YQDYYISAKKINIPGDEILEISSGRAHSLIRTNL-GVFAIGDN 148



 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 356 PMRSSFAERFDITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIG 493
           P R ++     I  I+ G+GF++ + K    ++++G GIN   QIG
Sbjct: 57  PKRIAYFNTKSIKFISSGFGFSLFASK----NRLYGAGINNRFQIG 98


>AL032625-7|CAN86642.1|  404|Caenorhabditis elegans Hypothetical
           protein W09G3.7a protein.
          Length = 404

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
 Frame = +1

Query: 538 YAPIYIPYKSLEC---EIKAVAAGRAHTIILTDKEGVYTLGNN 657
           Y   YI  K +     EI  +++GRAH++I T+  GV+ +G+N
Sbjct: 107 YQDYYISAKKINIPGDEILEISSGRAHSLIRTNL-GVFAIGDN 148



 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 356 PMRSSFAERFDITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIG 493
           P R ++     I  I+ G+GF++ + K    ++++G GIN   QIG
Sbjct: 57  PKRIAYFNTKSIKFISSGFGFSLFASK----NRLYGAGINNRFQIG 98


>AL023854-1|CAH60790.2|  404|Caenorhabditis elegans Hypothetical
           protein W09G3.7a protein.
          Length = 404

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
 Frame = +1

Query: 538 YAPIYIPYKSLEC---EIKAVAAGRAHTIILTDKEGVYTLGNN 657
           Y   YI  K +     EI  +++GRAH++I T+  GV+ +G+N
Sbjct: 107 YQDYYISAKKINIPGDEILEISSGRAHSLIRTNL-GVFAIGDN 148



 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 356 PMRSSFAERFDITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIG 493
           P R ++     I  I+ G+GF++ + K    ++++G GIN   QIG
Sbjct: 57  PKRIAYFNTKSIKFISSGFGFSLFASK----NRLYGAGINNRFQIG 98


>AC025716-18|AAT81178.1|  998|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.3 protein.
          Length = 998

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 553 IPYKSLECEIKAVAAGRAHTIILTDKEGVYTLGNNGIWSVR*GK*MSMKS 702
           IP       IK VA  + HT++LT+   ++  G+N    +  GK   M++
Sbjct: 460 IPDLPSRISIKQVALSKTHTMVLTNDNELFGFGDNSCGQLGFGKFSKMEN 509


>Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical
           protein C38D4.3 protein.
          Length = 1784

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = -1

Query: 600 SRCHCFNLTLQALVRYINRCIAKQKFQRMISRGEWYPIWESVLIPVPKTL--CCSEVFIE 427
           +R +  +L +Q++VR +NR     +F   I   EWYP       P P  L  C   V I 
Sbjct: 699 ARKNSSSLPVQSVVRKMNRQAPNAQFWNDIPHDEWYP-------PTPLDLLECLLNVSIS 751

Query: 426 ATVKP*PQAMFVISNLSAKED 364
            ++K      +VI  +S   +
Sbjct: 752 ESIKRELVVQYVIDWISTSPE 772


>U37430-2|AAL08045.2|  802|Caenorhabditis elegans Hypothetical
           protein K09F5.6 protein.
          Length = 802

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 391 NKHSLWLRFHSSLNKNFRAAQSFRYRYQYRFPNWIPFTTRNHPLELLLSYAPIYI 555
           N  S+W    ++L +++     F    +YR  N I + T  +P   L++YA IY+
Sbjct: 11  NLSSIWYTILTTLLQSYLLYLGFE---RYRLYNEIKWPTGGYPYGYLMAYATIYL 62


>AC025721-10|AAK29908.2| 1019|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.1 protein.
          Length = 1019

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 577 EIKAVAAGRAHTIILTDKEGVYTLGNN 657
           +I  ++AGR+HT+ +TD   V+  G+N
Sbjct: 95  KIIQISAGRSHTVSVTDDGRVFAWGSN 121


>Z47074-1|CAA87375.2|  851|Caenorhabditis elegans Hypothetical
           protein K07C10.1 protein.
          Length = 851

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 12/95 (12%)
 Frame = +1

Query: 424 SLNKNFRAAQSFRYRYQYRFPNWIPFTTRNHPLELLLSYAPIYIPYKS--------LECE 579
           SL   +  ++  R + Q +  NWI +   NHP  +L S   + IP  S        +EC+
Sbjct: 3   SLLLPYHPSEMLRQQRQIQM-NWISYYLGNHPRCVLFSVFCVLIPLLSYFVIYPLEIECD 61

Query: 580 IKAVAAGR-AHTI-ILTDKEGVYTLGNNG--IWSV 672
           I+   A +  H +  LT     Y +   G  IW V
Sbjct: 62  IRRGFANKHGHAVEELTKFSNFYNISVGGLEIWGV 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,251,095
Number of Sequences: 27780
Number of extensions: 365271
Number of successful extensions: 1067
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)