Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30206.Seq
         (533 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58762-3|AAM15611.1|  331|Caenorhabditis elegans Hypothetical pr...    31   0.69 
U58762-2|AAK39302.1|  722|Caenorhabditis elegans Hypothetical pr...    31   0.69 
U58762-1|AAK39301.1|  732|Caenorhabditis elegans Hypothetical pr...    31   0.69 
U64835-5|AAG24196.1|  592|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z73425-7|CAA97790.1| 1059|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z82089-1|CAB05002.1|  983|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z81511-2|CAB04167.1|  983|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z83122-4|CAB05602.2|  664|Caenorhabditis elegans Hypothetical pr...    27   6.4  

>U58762-3|AAM15611.1|  331|Caenorhabditis elegans Hypothetical
           protein T27F7.2c protein.
          Length = 331

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +3

Query: 297 STTTSITLVAAPTPSNKYYNSTSTKPVP 380
           STTTS + VA+ + SN   +ST T PVP
Sbjct: 110 STTTSTSSVASSSSSNGSSSSTDTSPVP 137


>U58762-2|AAK39302.1|  722|Caenorhabditis elegans Hypothetical
           protein T27F7.2b protein.
          Length = 722

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +3

Query: 297 STTTSITLVAAPTPSNKYYNSTSTKPVP 380
           STTTS + VA+ + SN   +ST T PVP
Sbjct: 479 STTTSTSSVASSSSSNGSSSSTDTSPVP 506


>U58762-1|AAK39301.1|  732|Caenorhabditis elegans Hypothetical
           protein T27F7.2a protein.
          Length = 732

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +3

Query: 297 STTTSITLVAAPTPSNKYYNSTSTKPVP 380
           STTTS + VA+ + SN   +ST T PVP
Sbjct: 489 STTTSTSSVASSSSSNGSSSSTDTSPVP 516


>U64835-5|AAG24196.1|  592|Caenorhabditis elegans Hypothetical
           protein T09D3.3 protein.
          Length = 592

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +3

Query: 297 STTTSITLVAAPTPSNKYYNSTSTKPVPVES 389
           STTTS T +  PT S+    +T+T PVPV S
Sbjct: 450 STTTSATTLV-PTTSSSTTTTTTTTPVPVTS 479


>Z73425-7|CAA97790.1| 1059|Caenorhabditis elegans Hypothetical protein
            F12F6.5 protein.
          Length = 1059

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 255  IELERGKEKIIFLYSTTTSITLVAAPTPSNKYYNSTSTKPV 377
            I+++  K+    LY+  T  T V A + SN   NST  +P+
Sbjct: 920  IDIKERKDSRDLLYAPITRATTVPANSGSNTEMNSTGVRPI 960


>Z82089-1|CAB05002.1|  983|Caenorhabditis elegans Hypothetical
           protein ZK270.1 protein.
          Length = 983

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 489 ISVVSFVLEEL*WWNVSIEPVEDVAAVIPRGHRGSRPAPV 370
           +S+ + +L  L WW V ++P+   A +I  G     PA V
Sbjct: 815 LSICAGILGFLSWWKVDLDPITMAAMIISIGFSVDIPAHV 854


>Z81511-2|CAB04167.1|  983|Caenorhabditis elegans Hypothetical
           protein ZK270.1 protein.
          Length = 983

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 489 ISVVSFVLEEL*WWNVSIEPVEDVAAVIPRGHRGSRPAPV 370
           +S+ + +L  L WW V ++P+   A +I  G     PA V
Sbjct: 815 LSICAGILGFLSWWKVDLDPITMAAMIISIGFSVDIPAHV 854


>Z83122-4|CAB05602.2|  664|Caenorhabditis elegans Hypothetical
           protein R11A5.7 protein.
          Length = 664

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +3

Query: 237 LQVVNQIELERGKEKIIFLYSTTTSITLVAAPTPSNKYYNSTSTKPVP 380
           L  +NQ+  E GK+  I  Y  T    +V    P    Y  T T P+P
Sbjct: 230 LYFINQLVSEYGKDAQITNYVDTLDFYIVPCLNPDG--YEYTRTSPIP 275


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,810,165
Number of Sequences: 27780
Number of extensions: 208587
Number of successful extensions: 649
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)