Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30168.Seq
         (847 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82059-6|CAB04874.1|  300|Caenorhabditis elegans Hypothetical pr...    33   0.19 
X76112-1|CAA53718.1|  300|Caenorhabditis elegans ADP/ATP translo...    33   0.19 
Z68218-2|CAA92472.1|  313|Caenorhabditis elegans Hypothetical pr...    33   0.34 
U80931-5|AAB38001.1|  313|Caenorhabditis elegans Hypothetical pr...    33   0.34 
AF003141-4|AAK21485.1|  300|Caenorhabditis elegans Hypothetical ...    29   5.5  
U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.     28   7.3  
U64842-4|AAB37086.2|  306|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical pr...    28   7.3  

>Z82059-6|CAB04874.1|  300|Caenorhabditis elegans Hypothetical
           protein T27E9.1a protein.
          Length = 300

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 14/19 (73%), Positives = 16/19 (84%)
 Frame = +1

Query: 4   RGTGGAFVLVLYDEIKKVL 60
           RGTGGA VL +YDEI+K L
Sbjct: 282 RGTGGALVLAIYDEIQKFL 300


>X76112-1|CAA53718.1|  300|Caenorhabditis elegans ADP/ATP
           translocase protein.
          Length = 300

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 14/19 (73%), Positives = 16/19 (84%)
 Frame = +1

Query: 4   RGTGGAFVLVLYDEIKKVL 60
           RGTGGA VL +YDEI+K L
Sbjct: 282 RGTGGALVLAIYDEIQKFL 300


>Z68218-2|CAA92472.1|  313|Caenorhabditis elegans Hypothetical
           protein K01H12.2 protein.
          Length = 313

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = +1

Query: 4   RGTGGAFVLVLYDEIKKVL 60
           RGTGGA VL +YDEI+K +
Sbjct: 295 RGTGGALVLAIYDEIQKFI 313


>U80931-5|AAB38001.1|  313|Caenorhabditis elegans Hypothetical
           protein T01B11.4 protein.
          Length = 313

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = +1

Query: 4   RGTGGAFVLVLYDEIKKVL 60
           RGTGGA VL +YDEI+K +
Sbjct: 295 RGTGGALVLAIYDEIQKFI 313


>AF003141-4|AAK21485.1|  300|Caenorhabditis elegans Hypothetical
           protein W02D3.6 protein.
          Length = 300

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 4   RGTGGAFVLVLYDEIKKVL 60
           R TGGA VL +YDEI+ ++
Sbjct: 282 RATGGALVLTIYDEIQHLI 300


>U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.
          Length = 1404

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 683  LKPLMSTIXVPHTNLTSHKCQRYIISFKIT*FYI 582
            L+P MSTI V  TN+    C    + F ++ FY+
Sbjct: 1151 LEPFMSTIGVIDTNVQRMMCTMGKVEFVVSNFYV 1184


>U64842-4|AAB37086.2|  306|Caenorhabditis elegans Hypothetical
           protein F25B4.7 protein.
          Length = 306

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +1

Query: 1   LRGTGGAFVLVLYDEIKKVL 60
           +RGTG A VL +Y+E++K +
Sbjct: 287 IRGTGAALVLAIYNELQKYM 306


>U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical protein
            F35H10.10 protein.
          Length = 1404

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 683  LKPLMSTIXVPHTNLTSHKCQRYIISFKIT*FYI 582
            L+P MSTI V  TN+    C    + F ++ FY+
Sbjct: 1151 LEPFMSTIGVIDTNVQRMMCTMGKVEFVVSNFYV 1184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,824,829
Number of Sequences: 27780
Number of extensions: 361652
Number of successful extensions: 510
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)