Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30141.Seq
(897 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protei... 29 3.4
U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protei... 29 3.4
U20555-1|AAC46918.1| 839|Caenorhabditis elegans zinc finger pro... 29 3.4
L23645-6|AAO91714.1| 635|Caenorhabditis elegans Zinc finger pro... 29 3.4
L23645-4|AAK26137.1| 867|Caenorhabditis elegans Zinc finger pro... 29 3.4
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr... 24 3.6
AF040655-12|AAB95039.1| 507|Caenorhabditis elegans Hypothetical... 29 4.5
Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr... 29 6.0
AL032655-7|CAH60798.1| 329|Caenorhabditis elegans Hypothetical ... 29 6.0
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein. 29 6.0
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein. 29 6.0
Z83233-9|CAB05766.1| 405|Caenorhabditis elegans Hypothetical pr... 28 7.9
>U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protein
1, isoform a protein.
Length = 330
Score = 29.5 bits (63), Expect = 3.4
Identities = 21/69 (30%), Positives = 31/69 (44%)
Frame = +3
Query: 444 LRAILGTLTVEEVYKDRDQFAGWYAKWLRRTSEEWESRFCPSRLRTSTTMSSIWASLGKF 623
LR ILGT T+ E+ DR++ + L +E W + LR S + ++
Sbjct: 160 LRTILGTHTLSEILSDREKISADMKISLDEATEPWGIKVERVELRDVRLPSQMQRAMA-- 217
Query: 624 ATANVKRDA 650
A A RDA
Sbjct: 218 AEAEATRDA 226
>U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protein
1, isoform b protein.
Length = 325
Score = 29.5 bits (63), Expect = 3.4
Identities = 21/69 (30%), Positives = 31/69 (44%)
Frame = +3
Query: 444 LRAILGTLTVEEVYKDRDQFAGWYAKWLRRTSEEWESRFCPSRLRTSTTMSSIWASLGKF 623
LR ILGT T+ E+ DR++ + L +E W + LR S + ++
Sbjct: 160 LRTILGTHTLSEILSDREKISADMKISLDEATEPWGIKVERVELRDVRLPSQMQRAMA-- 217
Query: 624 ATANVKRDA 650
A A RDA
Sbjct: 218 AEAEATRDA 226
>U20555-1|AAC46918.1| 839|Caenorhabditis elegans zinc finger
protein protein.
Length = 839
Score = 29.5 bits (63), Expect = 3.4
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = -3
Query: 508 PANWSLSLYTSSTVRVPRIARK*PSNVCRTVIL-ISLTVLPRNCSQAVVRSSSSFMILHW 332
PAN S SL+ +RK PSN+ TV L + T L + + +S + H
Sbjct: 707 PANHSSSLFEDIKAPKATYSRKTPSNIPLTVPLSTAATALTTTTAASSGAPVNSNIQNHR 766
Query: 331 ATPVTVSGTPWAVS 290
ATP T +G P A +
Sbjct: 767 ATPST-AGAPMAAT 779
>L23645-6|AAO91714.1| 635|Caenorhabditis elegans Zinc finger
protein protein 1,isoform c protein.
Length = 635
Score = 29.5 bits (63), Expect = 3.4
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = -3
Query: 508 PANWSLSLYTSSTVRVPRIARK*PSNVCRTVIL-ISLTVLPRNCSQAVVRSSSSFMILHW 332
PAN S SL+ +RK PSN+ TV L + T L + + +S + H
Sbjct: 475 PANHSSSLFEDIKAPKATYSRKTPSNIPLTVPLSTAATALTTTTAASSGAPVNSNIQNHR 534
Query: 331 ATPVTVSGTPWAVS 290
ATP T +G P A +
Sbjct: 535 ATPST-AGAPMAAT 547
>L23645-4|AAK26137.1| 867|Caenorhabditis elegans Zinc finger
protein protein 1,isoform a protein.
Length = 867
Score = 29.5 bits (63), Expect = 3.4
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = -3
Query: 508 PANWSLSLYTSSTVRVPRIARK*PSNVCRTVIL-ISLTVLPRNCSQAVVRSSSSFMILHW 332
PAN S SL+ +RK PSN+ TV L + T L + + +S + H
Sbjct: 707 PANHSSSLFEDIKAPKATYSRKTPSNIPLTVPLSTAATALTTTTAASSGAPVNSNIQNHR 766
Query: 331 ATPVTVSGTPWAVS 290
ATP T +G P A +
Sbjct: 767 ATPST-AGAPMAAT 779
>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical protein
F45E4.4 protein.
Length = 2361
Score = 24.2 bits (50), Expect(2) = 3.6
Identities = 18/73 (24%), Positives = 32/73 (43%)
Frame = +2
Query: 422 PANVGGSFASYSRNSYSRRGVQRQGPIRGLVREVAAPDVGRMGIEILSFTIKDVYDDVQY 601
P S AS + Y R + +R+ + D+G+ E LSF + ++D+ +
Sbjct: 943 PTPSADSMASRKSSEYDIRSISE-------IRQESESDIGKWYEEQLSFMRQSIHDEEED 995
Query: 602 LGQLGEVRNGQRE 640
+G E+R E
Sbjct: 996 VGH--EIRTDVEE 1006
Score = 23.4 bits (48), Expect(2) = 3.6
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +2
Query: 326 SRPVQDHERRRTSHNCLRAVPGQDRQRD*DDCPANVGGSF 445
+ PVQD E + + A G D + +D + GSF
Sbjct: 863 AEPVQDEEEEPITESGSDATSGADIFDEQEDASSGASGSF 902
>AF040655-12|AAB95039.1| 507|Caenorhabditis elegans Hypothetical
protein T24E12.1 protein.
Length = 507
Score = 29.1 bits (62), Expect = 4.5
Identities = 23/73 (31%), Positives = 32/73 (43%)
Frame = +3
Query: 435 EGHLRAILGTLTVEEVYKDRDQFAGWYAKWLRRTSEEWESRFCPSRLRTSTTMSSIWASL 614
E LR L + V + + + A Y+ + + E E R+ P LR S IWA +
Sbjct: 160 ETDLRCCLFDPEIPHVPQFKKRPANGYSLYQNQRKSE-EGRYEPW-LRLSKKKKEIWAEM 217
Query: 615 GKFATANVKRDAE 653
GK A R AE
Sbjct: 218 GKKVRAEQNRQAE 230
>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical
protein C12C8.3b protein.
Length = 1143
Score = 28.7 bits (61), Expect = 6.0
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 309 PLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEI---KMTVLQTLEGHLRAILGT 464
PL VA +++NE +LL CE+ G T+K+I +T T E +RA T
Sbjct: 511 PLGDIRVAVGEVVNESQLLQWQCEK-TGDTIKQIIDGIVTNATTAENEIRAAFDT 564
>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical
protein C12C8.3a protein.
Length = 1147
Score = 28.7 bits (61), Expect = 6.0
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 309 PLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEI---KMTVLQTLEGHLRAILGT 464
PL VA +++NE +LL CE+ G T+K+I +T T E +RA T
Sbjct: 515 PLGDIRVAVGEVVNESQLLQWQCEK-TGDTIKQIIDGIVTNATTAENEIRAAFDT 568
>AL032655-7|CAH60798.1| 329|Caenorhabditis elegans Hypothetical
protein Y6B3B.12 protein.
Length = 329
Score = 28.7 bits (61), Expect = 6.0
Identities = 25/99 (25%), Positives = 45/99 (45%)
Frame = +3
Query: 357 ELLTTACEQFLGKTVKEIKMTVLQTLEGHLRAILGTLTVEEVYKDRDQFAGWYAKWLRRT 536
+L+ C T + M LQ+ ++++ T+ VE+ + D+D+ + ++R
Sbjct: 42 DLMYEMCRSEQSVTGCKEAMLYLQSASNDFKSLIETINVEKQW-DQDENR---QEQIKRP 97
Query: 537 SEEWESRFCPSRLRTSTTMSSIWASLGKFATANVKRDAE 653
S WE R S + +SSI A K A+ + AE
Sbjct: 98 SVAWEVRKSMSSPNPALPISSIIAEAVKNASPPTNKAAE 136
>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
Length = 1147
Score = 28.7 bits (61), Expect = 6.0
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 309 PLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEI---KMTVLQTLEGHLRAILGT 464
PL VA +++NE +LL CE+ G T+K+I +T T E +RA T
Sbjct: 515 PLGDIRVAVGEVVNESQLLQWQCEK-TGDTIKQIIDGIVTNATTAENEIRAAFDT 568
>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
Length = 1143
Score = 28.7 bits (61), Expect = 6.0
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 309 PLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEI---KMTVLQTLEGHLRAILGT 464
PL VA +++NE +LL CE+ G T+K+I +T T E +RA T
Sbjct: 511 PLGDIRVAVGEVVNESQLLQWQCEK-TGDTIKQIIDGIVTNATTAENEIRAAFDT 564
>Z83233-9|CAB05766.1| 405|Caenorhabditis elegans Hypothetical
protein K06B4.10 protein.
Length = 405
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 135 DSVDVAHFESFYSDFHDTHTALHN 64
D +D+AH ESF+++ H T T N
Sbjct: 230 DYIDLAHSESFFTNDHQTFTERDN 253
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,020,121
Number of Sequences: 27780
Number of extensions: 507068
Number of successful extensions: 1464
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1464
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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