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Last updated: 2022/09/19
 
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30090.Seq
         (437 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82256-2|CAB05115.1|   62|Caenorhabditis elegans Hypothetical pr...    52   1e-07
AL032657-13|CAB76744.1|   87|Caenorhabditis elegans Hypothetical...    46   9e-06
AL032625-6|CAN86641.1|  167|Caenorhabditis elegans Hypothetical ...    40   8e-04
AC006679-13|AAL38965.1|  644|Caenorhabditis elegans Coelomocyte ...    27   4.5  
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ...    27   7.9  

>Z82256-2|CAB05115.1|   62|Caenorhabditis elegans Hypothetical
           protein B0513.3 protein.
          Length = 62

 Score = 52.4 bits (120), Expect = 1e-07
 Identities = 21/26 (80%), Positives = 23/26 (88%)
 Frame = +3

Query: 165 MAKXXNHTNHNQNRKAHRNGIKKPRK 242
           MAK  NHTNHNQN+KAHRNGI KP+K
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGITKPKK 26


>AL032657-13|CAB76744.1|   87|Caenorhabditis elegans Hypothetical
           protein Y47H9C.14 protein.
          Length = 87

 Score = 46.4 bits (105), Expect = 9e-06
 Identities = 18/24 (75%), Positives = 20/24 (83%)
 Frame = +3

Query: 171 KXXNHTNHNQNRKAHRNGIKKPRK 242
           K  NHTNHN+N KAHRNGI KP+K
Sbjct: 14  KPENHTNHNRNNKAHRNGITKPKK 37


>AL032625-6|CAN86641.1|  167|Caenorhabditis elegans Hypothetical
           protein Y37H9A.5 protein.
          Length = 167

 Score = 39.9 bits (89), Expect = 8e-04
 Identities = 16/23 (69%), Positives = 17/23 (73%)
 Frame = +3

Query: 171 KXXNHTNHNQNRKAHRNGIKKPR 239
           K  NHTNHNQN  AHR GI KP+
Sbjct: 80  KSKNHTNHNQNNTAHRIGITKPK 102


>AC006679-13|AAL38965.1|  644|Caenorhabditis elegans Coelomocyte
           uptake defective protein5, isoform b protein.
          Length = 644

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -1

Query: 266 CQGWFVPGLPWLFDTISV---SFAVLVMICMILXLC 168
           C G  + G+ W FDT+ +      VL++  + L LC
Sbjct: 310 CNGRIIKGVGWSFDTLLIGGTDIFVLILCILSLILC 345


>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
            protein Y32H12A.8 protein.
          Length = 3901

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 244  PGTNHPWHGSKIFKESKVLQEGXPEAS 324
            PGT HPW   +++++    +    EA+
Sbjct: 1664 PGTRHPWETDQVYQQRLQAERAEDEAA 1690


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,914,106
Number of Sequences: 27780
Number of extensions: 134499
Number of successful extensions: 376
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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