SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/09/19
 
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30044.Seq
         (443 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82256-2|CAB05115.1|   62|Caenorhabditis elegans Hypothetical pr...    57   7e-09
AL032657-13|CAB76744.1|   87|Caenorhabditis elegans Hypothetical...    47   5e-06
AL032625-6|CAN86641.1|  167|Caenorhabditis elegans Hypothetical ...    44   4e-05
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    27   6.1  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    27   6.1  

>Z82256-2|CAB05115.1|   62|Caenorhabditis elegans Hypothetical
           protein B0513.3 protein.
          Length = 62

 Score = 56.8 bits (131), Expect = 7e-09
 Identities = 23/26 (88%), Positives = 25/26 (96%)
 Frame = +3

Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRK 242
           MAKSKNHTNHNQN+KAHRNGI KP+K
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGITKPKK 26


>AL032657-13|CAB76744.1|   87|Caenorhabditis elegans Hypothetical
           protein Y47H9C.14 protein.
          Length = 87

 Score = 47.2 bits (107), Expect = 5e-06
 Identities = 18/24 (75%), Positives = 21/24 (87%)
 Frame = +3

Query: 171 KSKNHTNHNQNRKAHRNGIKKPRK 242
           K +NHTNHN+N KAHRNGI KP+K
Sbjct: 14  KPENHTNHNRNNKAHRNGITKPKK 37


>AL032625-6|CAN86641.1|  167|Caenorhabditis elegans Hypothetical
           protein Y37H9A.5 protein.
          Length = 167

 Score = 44.4 bits (100), Expect = 4e-05
 Identities = 18/23 (78%), Positives = 19/23 (82%)
 Frame = +3

Query: 171 KSKNHTNHNQNRKAHRNGIKKPR 239
           KSKNHTNHNQN  AHR GI KP+
Sbjct: 80  KSKNHTNHNQNNTAHRIGITKPK 102


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
            lineage protein 13 protein.
          Length = 2248

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 225  YHFCELCGFGYDLYDSL 175
            Y+FC++CGFG    DS+
Sbjct: 1685 YYFCKVCGFGSTSADSV 1701


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
            protein LIN-13 protein.
          Length = 2248

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 225  YHFCELCGFGYDLYDSL 175
            Y+FC++CGFG    DS+
Sbjct: 1685 YYFCKVCGFGSTSADSV 1701


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,273,002
Number of Sequences: 27780
Number of extensions: 145349
Number of successful extensions: 428
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2022 -