Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0030
         (599 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88180-2|AAB42298.3|  355|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AC024859-7|AAK29968.1|  550|Caenorhabditis elegans Hypothetical ...    27   7.7  

>U88180-2|AAB42298.3|  355|Caenorhabditis elegans Hypothetical
           protein T27A3.5 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = +1

Query: 64  PKISYYVKPL*HSPVKFISFEFIQFECEKTMCNADRTPRSLSSKAGRANRVLYISSKRII 243
           P +  +VK    + VK +S EF+  + E   CN  +T      +  R   V  I   R++
Sbjct: 57  PILRDFVKATIQTGVKQLSTEFLNLKMETQPCNKPKTGHEGHPEKNRYKDVYCIDDTRVV 116


>AC024859-7|AAK29968.1|  550|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.13 protein.
          Length = 550

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 397 YCADIEYVALRHIT*SFKLNE*D 465
           +C DI YV   HI  SF  NE D
Sbjct: 449 HCTDISYVVGNHIVNSFDFNEED 471


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,002,670
Number of Sequences: 27780
Number of extensions: 221804
Number of successful extensions: 419
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)