Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301E11f
         (353 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16559-1|AAA27934.2|  397|Caenorhabditis elegans Hypothetical pr...    29   0.93 
Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical pr...    28   2.2  
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    27   2.8  
L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position...    27   3.8  
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane...    27   3.8  
Z81558-5|CAB04542.2|  543|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z81459-2|CAB03828.2|  543|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AF106573-6|AAC78156.2|   65|Caenorhabditis elegans Hypothetical ...    27   5.0  

>L16559-1|AAA27934.2|  397|Caenorhabditis elegans Hypothetical
           protein C06E1.3 protein.
          Length = 397

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -1

Query: 293 FKFAHYCAP*ITIASLPHNVIETYSHCAL*NVIAMLVYDSLG-CDH*VTFTKVN 135
           F FA +C   + +  LPHN  ++     +  +IA LVY  L  C+  + FT  N
Sbjct: 195 FAFACWCLSVVLMLFLPHNAYKSILATGISCLIACLVYLLLSPCELRIAFTGEN 248


>Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical protein
            F59F3.5 protein.
          Length = 1199

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 220  HTVRYKMSLLCWFMTHSDAITELHLLKLIDKHRRHFSS 107
            H   YK+  +CW  +  D  T    +KL   H ++F+S
Sbjct: 1130 HKDVYKIMKMCWQASPDDRPTFAECIKLFKNHIQYFAS 1167


>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
            protein C08G9.2 protein.
          Length = 2224

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 312  PNPTRPL*IRALLCSVNHNCESSTQCYRNVFTLCAIKCH 196
            P P R L    +LC  +  C  +++C  N  T   I CH
Sbjct: 1617 PIPQRDLYRNVILCENDGGCGKNSKCVLNPKTEMGICCH 1655


>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
           protein 4 protein.
          Length = 2104

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
 Frame = -3

Query: 276 LCSVNHNCESSTQCYRNVF---TLCAIKCHCYVG 184
           +C V   CE + +C RN F   T    KC C  G
Sbjct: 275 VCKVFSQCEQANECDRNAFCSNTYDGPKCQCKDG 308


>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
           matrix receptor MUP-4 protein.
          Length = 2104

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
 Frame = -3

Query: 276 LCSVNHNCESSTQCYRNVF---TLCAIKCHCYVG 184
           +C V   CE + +C RN F   T    KC C  G
Sbjct: 275 VCKVFSQCEQANECDRNAFCSNTYDGPKCQCKDG 308


>Z81558-5|CAB04542.2|  543|Caenorhabditis elegans Hypothetical
           protein F59D12.4 protein.
          Length = 543

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +1

Query: 106 WN*NGVGVYQLTLVNVT 156
           WN  GVG Y+L LVN T
Sbjct: 391 WNGTGVGEYKLPLVNYT 407


>Z81459-2|CAB03828.2|  543|Caenorhabditis elegans Hypothetical
           protein F59D12.4 protein.
          Length = 543

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +1

Query: 106 WN*NGVGVYQLTLVNVT 156
           WN  GVG Y+L LVN T
Sbjct: 391 WNGTGVGEYKLPLVNYT 407


>AF106573-6|AAC78156.2|   65|Caenorhabditis elegans Hypothetical
           protein F52D2.5 protein.
          Length = 65

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = +3

Query: 117 WRRCLSINFSKC--NSVIASE*VINQHSNDIL 206
           W  CLS  F KC   S  ASE  +  H N +L
Sbjct: 32  WTLCLSAFFQKCLNKSASASELSVGMHRNCLL 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,768,247
Number of Sequences: 27780
Number of extensions: 138816
Number of successful extensions: 278
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)