Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0025.Seq
         (439 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032628-1|CAA21555.1|  218|Caenorhabditis elegans Hypothetical ...    28   3.4  
Z72510-3|CAA96653.1|  366|Caenorhabditis elegans Hypothetical pr...    27   4.5  
AL132898-8|CAB60959.1|  297|Caenorhabditis elegans Hypothetical ...    27   4.5  
Z95559-16|CAB63365.3| 1440|Caenorhabditis elegans Hypothetical p...    27   6.0  
Z92782-9|CAE17814.1|  329|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AL032630-11|CAA21570.1|  296|Caenorhabditis elegans Hypothetical...    27   6.0  
AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical...    27   7.9  
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical...    27   7.9  

>AL032628-1|CAA21555.1|  218|Caenorhabditis elegans Hypothetical
           protein Y38H6A.1 protein.
          Length = 218

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -3

Query: 368 KNSSFKTSHCAIFYNSNTIVICF*HCACVWLEFYRFVGHVVCK*ICVRCFVLMS 207
           +N S K   CAI Y    + +    CA V  +F+RF+   +   I    ++L+S
Sbjct: 164 QNLSAKQYACAIKYAPQVVTVTGYKCATVIDKFFRFLSFFIFSQILFCDYILVS 217


>Z72510-3|CAA96653.1|  366|Caenorhabditis elegans Hypothetical
           protein F53B7.4 protein.
          Length = 366

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 126 RECKALLYNNIRCSSSNVLYDCDCYC 49
           +EC +  Y +IRC   ++ Y+C  YC
Sbjct: 128 KECSS--YESIRCPEYSLCYNCSKYC 151


>AL132898-8|CAB60959.1|  297|Caenorhabditis elegans Hypothetical
           protein Y59A8B.11 protein.
          Length = 297

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = -1

Query: 406 DIEYLGVRSVRA*RILLLKPLIAQSSTIPILLSFVFSTVRVFGSNF 269
           D  YL V      R +LLK  + +S  I     F    VRVF  NF
Sbjct: 221 DTAYLSVADAVKIRDILLKSTVFESGIITSRNIFSVGVVRVFNPNF 266


>Z95559-16|CAB63365.3| 1440|Caenorhabditis elegans Hypothetical
           protein Y41E3.9 protein.
          Length = 1440

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 169 LHTSILSVIP-IYTDISTKQRTHIYLHTTC 255
           +   +++ +P I+TDIS +Q T + LH  C
Sbjct: 235 VRNDLIAALPEIFTDISLQQSTAVRLHKEC 264


>Z92782-9|CAE17814.1|  329|Caenorhabditis elegans Hypothetical
           protein F14F8.12 protein.
          Length = 329

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +3

Query: 177 INSERNPHLHGHQYKTTDTYLLTHNMPYESVKFEPNTRTVLKTNDNS 317
           I+  +N HLH  Q+     Y+   +   E+  F+     V+ +N NS
Sbjct: 183 IDINKNQHLHSQQHIYLQNYIFIQSFLVETPIFQIPVPLVIGSNTNS 229


>AL032630-11|CAA21570.1|  296|Caenorhabditis elegans Hypothetical
           protein Y62H9A.11 protein.
          Length = 296

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +3

Query: 177 INSERNPHLHGHQYKTTDTYLLTH--NMPYESVKFEPNTRTVLKTND 311
           IN    P   G  +K    Y  T+  NMPY   KF+P     LK+ D
Sbjct: 14  INGFLIPSYSGILFKLLIFYFRTYLCNMPYNKSKFQPFFTDELKSTD 60


>AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical
           protein Y43F8B.3b protein.
          Length = 1398

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 123 ECKALLYNNIRCSSSNVLYDCDCYCTVNLF 34
           +CK   YN  R + +N L   DC  T ++F
Sbjct: 719 QCKQFTYNGRRGNQNNFLTQEDCAATCDVF 748


>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
            protein Y43F8B.3a protein.
          Length = 1816

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 123  ECKALLYNNIRCSSSNVLYDCDCYCTVNLF 34
            +CK   YN  R + +N L   DC  T ++F
Sbjct: 1137 QCKQFTYNGRRGNQNNFLTQEDCAATCDVF 1166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,763,636
Number of Sequences: 27780
Number of extensions: 210923
Number of successful extensions: 524
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)