Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30070
         (560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88173-4|AAK21386.1|  126|Caenorhabditis elegans Vacuolar h atpa...    54   7e-08
U61947-7|AAB03137.1|  735|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z66522-7|CAA91409.2|  472|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z66520-13|CAA91392.2|  472|Caenorhabditis elegans Hypothetical p...    29   2.3  
L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z82266-9|CAB05186.1|  276|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type  chlor...    27   9.2  
U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type  chlor...    27   9.2  
U40945-1|AAA81719.2|  656|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type chlo...    27   9.2  
AF173173-1|AAF13166.1|  978|Caenorhabditis elegans CLC chloride ...    27   9.2  
AF040647-6|AAR30205.3|  436|Caenorhabditis elegans Hypothetical ...    27   9.2  

>U88173-4|AAK21386.1|  126|Caenorhabditis elegans Vacuolar h atpase
           protein 10 protein.
          Length = 126

 Score = 54.0 bits (124), Expect = 7e-08
 Identities = 30/80 (37%), Positives = 44/80 (55%)
 Frame = +1

Query: 151 REEAQDEVXXXXXXXXXXXXXXXAKHMGTREGVAAKIDAETKVKIEEMNKMVQTQKEAVI 330
           ++EAQ EV                +++GT+E + +KI  +T+ +I  M + V   K+AVI
Sbjct: 37  KQEAQAEVEKYKQQREAEFKAFEQQYLGTKEDIESKIRRDTEDQISGMKQSVAGNKQAVI 96

Query: 331 KDVLNLVYDIKPELHINYRL 390
             +L LV DIKPELH N  L
Sbjct: 97  VRLLQLVCDIKPELHHNLTL 116



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 22/24 (91%), Positives = 24/24 (100%)
 Frame = +3

Query: 42  MASQTQGIQQLLAAEKRAAEKVSE 113
           MASQTQGIQQLLAAEKRAAEK++E
Sbjct: 1   MASQTQGIQQLLAAEKRAAEKINE 24


>U61947-7|AAB03137.1|  735|Caenorhabditis elegans Hypothetical
           protein C06G3.9 protein.
          Length = 735

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 86  KTRCGESQRGKEAKSETPKAGQGRRLKMKLKSTDRSVKGSSKNLKPST 229
           K + G ++   + + ET   G G++     K   +SVKG SK+  PST
Sbjct: 394 KKKQGGAKAAVKVQEETDDWGDGKKGGKGGKKNAKSVKGGSKSSAPST 441


>Z66522-7|CAA91409.2|  472|Caenorhabditis elegans Hypothetical
           protein F14E5.1 protein.
          Length = 472

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 270 LGIDLGRNTFPGTHVLGFKFFELPFTLLSVLFNFILSLLP 151
           +G  LG++   G+H+    FF +PF L   L  FIL   P
Sbjct: 168 VGSFLGQDYIIGSHLFWLCFFVVPFCLFFTLILFILPETP 207


>Z66520-13|CAA91392.2|  472|Caenorhabditis elegans Hypothetical
           protein F14E5.1 protein.
          Length = 472

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 270 LGIDLGRNTFPGTHVLGFKFFELPFTLLSVLFNFILSLLP 151
           +G  LG++   G+H+    FF +PF L   L  FIL   P
Sbjct: 168 VGSFLGQDYIIGSHLFWLCFFVVPFCLFFTLILFILPETP 207


>L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical
           protein ZK1236.3a protein.
          Length = 1000

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 161 LKMKLKSTDRSVK-GSSKNLKPSTWVPGKVLRPRSMPR 271
           + +K  S   S K  SS+ LKP T++P     P SMP+
Sbjct: 3   INIKYSSKFSSSKTSSSEELKPKTYIPAYYQPPVSMPK 40


>Z82266-9|CAB05186.1|  276|Caenorhabditis elegans Hypothetical
           protein F23B2.7 protein.
          Length = 276

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = +2

Query: 59  RNPTASSC*KTRCGESQRGKEAKSETPKAGQ-GRRLKMKLKSTDRSVKGSSKNLKPSTWV 235
           +NP  S   K+  G   +  E K +TP  G+ G+    K     +S K  S N + +   
Sbjct: 73  QNPQKSGMQKSAIGNGTQQVEEKPKTPGNGKNGKAYSKKKSKKTKSEKSQSSNKEGAPMK 132

Query: 236 PGKVLR 253
           P   +R
Sbjct: 133 PMDPIR 138


>U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type  chloride
           channel protein4, isoform a protein.
          Length = 1050

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -1

Query: 434 VRRKLCIKYNNFA*FKR*LMWSSGLMSYTRFKTSLMTASFC 312
           ++RK    YN +   +  L+W  GL+ +  +   L+ AS C
Sbjct: 169 IQRKTVSIYNIYGSDQSYLLWGCGLLGWCGYMIGLVAASAC 209


>U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type  chloride
           channel protein4, isoform b protein.
          Length = 1085

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -1

Query: 434 VRRKLCIKYNNFA*FKR*LMWSSGLMSYTRFKTSLMTASFC 312
           ++RK    YN +   +  L+W  GL+ +  +   L+ AS C
Sbjct: 169 IQRKTVSIYNIYGSDQSYLLWGCGLLGWCGYMIGLVAASAC 209


>U40945-1|AAA81719.2|  656|Caenorhabditis elegans Hypothetical
           protein F10D7.1 protein.
          Length = 656

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 149 QGRRLKMKLKSTDRSVKGSSKNLKPSTWV 235
           + +R+K + +STD+   GS K  +P+T V
Sbjct: 342 RSKRVKSEFQSTDKKRAGSEKQKRPATKV 370


>AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type
           chloride channel CLH-4b protein.
          Length = 1084

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -1

Query: 434 VRRKLCIKYNNFA*FKR*LMWSSGLMSYTRFKTSLMTASFC 312
           ++RK    YN +   +  L+W  GL+ +  +   L+ AS C
Sbjct: 169 IQRKTVSIYNIYGSDQSYLLWGCGLLGWCGYMIGLVAASAC 209


>AF173173-1|AAF13166.1|  978|Caenorhabditis elegans CLC chloride
           channel protein protein.
          Length = 978

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -1

Query: 434 VRRKLCIKYNNFA*FKR*LMWSSGLMSYTRFKTSLMTASFC 312
           ++RK    YN +   +  L+W  GL+ +  +   L+ AS C
Sbjct: 97  IQRKTVSIYNIYGSDQSYLLWGCGLLGWCGYMIGLVAASAC 137


>AF040647-6|AAR30205.3|  436|Caenorhabditis elegans Hypothetical
           protein F54D12.7 protein.
          Length = 436

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 536 VGSKKTCRLHTLVTMICQINIQFIFLNKSDQIKLVRRKL 420
           + S +TC L T   +I  +    IFL  SD +K ++ KL
Sbjct: 389 LSSLETCFLKTTKPVISTLFYTIIFLQYSDTVKTLQTKL 427


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,848,547
Number of Sequences: 27780
Number of extensions: 191123
Number of successful extensions: 608
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)