Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30073
(734 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 52 4e-07
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 52 4e-07
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 52 4e-07
Z46795-7|CAO82048.1| 2371|Caenorhabditis elegans Hypothetical pr... 32 0.48
Z46795-5|CAA86789.5| 2393|Caenorhabditis elegans Hypothetical pr... 32 0.48
Z46795-4|CAM82783.2| 2184|Caenorhabditis elegans Hypothetical pr... 32 0.48
Z46795-3|CAM82782.2| 2491|Caenorhabditis elegans Hypothetical pr... 32 0.48
Z46792-9|CAO82020.1| 2371|Caenorhabditis elegans Hypothetical pr... 32 0.48
Z46792-7|CAA86769.5| 2393|Caenorhabditis elegans Hypothetical pr... 32 0.48
Z46792-6|CAM82812.2| 2184|Caenorhabditis elegans Hypothetical pr... 32 0.48
Z46792-5|CAM82811.2| 2491|Caenorhabditis elegans Hypothetical pr... 32 0.48
Z46792-2|CAL44970.3| 2202|Caenorhabditis elegans Hypothetical pr... 32 0.48
DQ823041-1|ABH03415.1| 2166|Caenorhabditis elegans MPZ-1 protein. 32 0.48
Z77660-9|CAB01179.1| 602|Caenorhabditis elegans Hypothetical pr... 31 0.64
AL023828-27|CAI46622.1| 308|Caenorhabditis elegans Hypothetical... 31 0.64
Z92827-1|CAB07326.1| 394|Caenorhabditis elegans Hypothetical pr... 28 6.0
AC024860-3|AAK29985.1| 345|Caenorhabditis elegans Hypothetical ... 28 6.0
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 52.0 bits (119), Expect = 4e-07
Identities = 29/95 (30%), Positives = 48/95 (50%)
Frame = -3
Query: 507 CGDYRALNARTVPDRYPVRHIHDFAHNLSGSKVFSTIDLVKAYHQIPIAEEDVPKTAIVT 328
C DYR +N + +P+ +I +L+G K+++ D++ + QIP+ E+ TA
Sbjct: 1081 CIDYRKVNKVVKNNAHPLPNIEATLQSLAGKKLYTVFDMIAGFWQIPLDEKSKEITAFAI 1140
Query: 327 PFGLFEFPFMTFGLRNAGQTFQRFMMRSHGVLISV 223
LFE+ + FGL + FQ M G L+ V
Sbjct: 1141 GSELFEWNVLPFGLVISPALFQGTMEEIIGDLLGV 1175
Score = 50.8 bits (116), Expect = 1e-06
Identities = 21/72 (29%), Positives = 39/72 (54%)
Frame = -2
Query: 223 FPYVDDILVHSADENLHLKHLRTLFERLQEYGVVINPSKCTLGVDEVNFLGYHINSEGTR 44
F YVDD+L+ S D HL+ ++ R+++ G+ + SKC + EV +LG+ + +G
Sbjct: 1178 FVYVDDLLIASKDMEQHLQDVKEALTRIRKSGMKLRASKCHIAKKEVEYLGHKVTLDGVE 1237
Query: 43 PPQARIQVLLDF 8
+ + + F
Sbjct: 1238 TQEVKTDKMKQF 1249
Score = 33.9 bits (74), Expect = 0.12
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -1
Query: 665 PIXCRPRRLAPQKLVAAKKEFEDMVQSGTARPSKSAWSSPLHMTIKKDDTWR 510
PI +PR + +K + M+ R SKS WSSP+ + KKD + R
Sbjct: 1028 PIRQKPRPIPLALKPEIRKMIQKMLNQKVIRESKSPWSSPVVLVKKKDGSIR 1079
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 52.0 bits (119), Expect = 4e-07
Identities = 29/95 (30%), Positives = 48/95 (50%)
Frame = -3
Query: 507 CGDYRALNARTVPDRYPVRHIHDFAHNLSGSKVFSTIDLVKAYHQIPIAEEDVPKTAIVT 328
C DYR +N + +P+ +I +L+G K+++ D++ + QIP+ E+ TA
Sbjct: 984 CIDYRKVNKVVKNNAHPLPNIEATLQSLAGKKLYTVFDMIAGFWQIPLDEKSKEITAFAI 1043
Query: 327 PFGLFEFPFMTFGLRNAGQTFQRFMMRSHGVLISV 223
LFE+ + FGL + FQ M G L+ V
Sbjct: 1044 GSELFEWNVLPFGLVISPALFQGTMEEIIGDLLGV 1078
Score = 50.8 bits (116), Expect = 1e-06
Identities = 21/72 (29%), Positives = 39/72 (54%)
Frame = -2
Query: 223 FPYVDDILVHSADENLHLKHLRTLFERLQEYGVVINPSKCTLGVDEVNFLGYHINSEGTR 44
F YVDD+L+ S D HL+ ++ R+++ G+ + SKC + EV +LG+ + +G
Sbjct: 1081 FVYVDDLLIASKDMEQHLQDVKEALTRIRKSGMKLRASKCHIAKKEVEYLGHKVTLDGVE 1140
Query: 43 PPQARIQVLLDF 8
+ + + F
Sbjct: 1141 TQEVKTDKMKQF 1152
Score = 33.9 bits (74), Expect = 0.12
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -1
Query: 665 PIXCRPRRLAPQKLVAAKKEFEDMVQSGTARPSKSAWSSPLHMTIKKDDTWR 510
PI +PR + +K + M+ R SKS WSSP+ + KKD + R
Sbjct: 931 PIRQKPRPIPLALKPEIRKMIQKMLNQKVIRESKSPWSSPVVLVKKKDGSIR 982
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 52.0 bits (119), Expect = 4e-07
Identities = 29/95 (30%), Positives = 48/95 (50%)
Frame = -3
Query: 507 CGDYRALNARTVPDRYPVRHIHDFAHNLSGSKVFSTIDLVKAYHQIPIAEEDVPKTAIVT 328
C DYR +N + +P+ +I +L+G K+++ D++ + QIP+ E+ TA
Sbjct: 995 CIDYRKVNKVVKNNAHPLPNIEATLQSLAGKKLYTVFDMIAGFWQIPLDEKSKEITAFAI 1054
Query: 327 PFGLFEFPFMTFGLRNAGQTFQRFMMRSHGVLISV 223
LFE+ + FGL + FQ M G L+ V
Sbjct: 1055 GSELFEWNVLPFGLVISPALFQGTMEEIIGDLLGV 1089
Score = 50.8 bits (116), Expect = 1e-06
Identities = 21/72 (29%), Positives = 39/72 (54%)
Frame = -2
Query: 223 FPYVDDILVHSADENLHLKHLRTLFERLQEYGVVINPSKCTLGVDEVNFLGYHINSEGTR 44
F YVDD+L+ S D HL+ ++ R+++ G+ + SKC + EV +LG+ + +G
Sbjct: 1092 FVYVDDLLIASKDMEQHLQDVKEALTRIRKSGMKLRASKCHIAKKEVEYLGHKVTLDGVE 1151
Query: 43 PPQARIQVLLDF 8
+ + + F
Sbjct: 1152 TQEVKTDKMKQF 1163
Score = 33.9 bits (74), Expect = 0.12
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -1
Query: 665 PIXCRPRRLAPQKLVAAKKEFEDMVQSGTARPSKSAWSSPLHMTIKKDDTWR 510
PI +PR + +K + M+ R SKS WSSP+ + KKD + R
Sbjct: 942 PIRQKPRPIPLALKPEIRKMIQKMLNQKVIRESKSPWSSPVVLVKKKDGSIR 993
>Z46795-7|CAO82048.1| 2371|Caenorhabditis elegans Hypothetical protein
C52A11.4f protein.
Length = 2371
Score = 31.9 bits (69), Expect = 0.48
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = -3
Query: 492 ALNARTVPDRYPVRHIHDFAHNLSGSKVFSTIDLVKAYHQIPIAEEDVPKTAIVTP 325
A+ + P R+ ++ +H N+ S ST+ V+ + P EE++P TA+VTP
Sbjct: 1505 AIKNASNPVRFVLQSLHTNQQNMINSASNSTVGSVRFENAKP--EEELPPTALVTP 1558
>Z46795-5|CAA86789.5| 2393|Caenorhabditis elegans Hypothetical protein
C52A11.4a protein.
Length = 2393
Score = 31.9 bits (69), Expect = 0.48
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = -3
Query: 492 ALNARTVPDRYPVRHIHDFAHNLSGSKVFSTIDLVKAYHQIPIAEEDVPKTAIVTP 325
A+ + P R+ ++ +H N+ S ST+ V+ + P EE++P TA+VTP
Sbjct: 1527 AIKNASNPVRFVLQSLHTNQQNMINSASNSTVGSVRFENAKP--EEELPPTALVTP 1580
>Z46795-4|CAM82783.2| 2184|Caenorhabditis elegans Hypothetical protein
C52A11.4e protein.
Length = 2184
Score = 31.9 bits (69), Expect = 0.48
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = -3
Query: 492 ALNARTVPDRYPVRHIHDFAHNLSGSKVFSTIDLVKAYHQIPIAEEDVPKTAIVTP 325
A+ + P R+ ++ +H N+ S ST+ V+ + P EE++P TA+VTP
Sbjct: 1318 AIKNASNPVRFVLQSLHTNQQNMINSASNSTVGSVRFENAKP--EEELPPTALVTP 1371
>Z46795-3|CAM82782.2| 2491|Caenorhabditis elegans Hypothetical protein
C52A11.4d protein.
Length = 2491
Score = 31.9 bits (69), Expect = 0.48
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = -3
Query: 492 ALNARTVPDRYPVRHIHDFAHNLSGSKVFSTIDLVKAYHQIPIAEEDVPKTAIVTP 325
A+ + P R+ ++ +H N+ S ST+ V+ + P EE++P TA+VTP
Sbjct: 1625 AIKNASNPVRFVLQSLHTNQQNMINSASNSTVGSVRFENAKP--EEELPPTALVTP 1678
>Z46792-9|CAO82020.1| 2371|Caenorhabditis elegans Hypothetical protein
C52A11.4f protein.
Length = 2371
Score = 31.9 bits (69), Expect = 0.48
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = -3
Query: 492 ALNARTVPDRYPVRHIHDFAHNLSGSKVFSTIDLVKAYHQIPIAEEDVPKTAIVTP 325
A+ + P R+ ++ +H N+ S ST+ V+ + P EE++P TA+VTP
Sbjct: 1505 AIKNASNPVRFVLQSLHTNQQNMINSASNSTVGSVRFENAKP--EEELPPTALVTP 1558
>Z46792-7|CAA86769.5| 2393|Caenorhabditis elegans Hypothetical protein
C52A11.4a protein.
Length = 2393
Score = 31.9 bits (69), Expect = 0.48
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = -3
Query: 492 ALNARTVPDRYPVRHIHDFAHNLSGSKVFSTIDLVKAYHQIPIAEEDVPKTAIVTP 325
A+ + P R+ ++ +H N+ S ST+ V+ + P EE++P TA+VTP
Sbjct: 1527 AIKNASNPVRFVLQSLHTNQQNMINSASNSTVGSVRFENAKP--EEELPPTALVTP 1580
>Z46792-6|CAM82812.2| 2184|Caenorhabditis elegans Hypothetical protein
C52A11.4e protein.
Length = 2184
Score = 31.9 bits (69), Expect = 0.48
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = -3
Query: 492 ALNARTVPDRYPVRHIHDFAHNLSGSKVFSTIDLVKAYHQIPIAEEDVPKTAIVTP 325
A+ + P R+ ++ +H N+ S ST+ V+ + P EE++P TA+VTP
Sbjct: 1318 AIKNASNPVRFVLQSLHTNQQNMINSASNSTVGSVRFENAKP--EEELPPTALVTP 1371
>Z46792-5|CAM82811.2| 2491|Caenorhabditis elegans Hypothetical protein
C52A11.4d protein.
Length = 2491
Score = 31.9 bits (69), Expect = 0.48
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = -3
Query: 492 ALNARTVPDRYPVRHIHDFAHNLSGSKVFSTIDLVKAYHQIPIAEEDVPKTAIVTP 325
A+ + P R+ ++ +H N+ S ST+ V+ + P EE++P TA+VTP
Sbjct: 1625 AIKNASNPVRFVLQSLHTNQQNMINSASNSTVGSVRFENAKP--EEELPPTALVTP 1678
>Z46792-2|CAL44970.3| 2202|Caenorhabditis elegans Hypothetical protein
C52A11.4c protein.
Length = 2202
Score = 31.9 bits (69), Expect = 0.48
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = -3
Query: 492 ALNARTVPDRYPVRHIHDFAHNLSGSKVFSTIDLVKAYHQIPIAEEDVPKTAIVTP 325
A+ + P R+ ++ +H N+ S ST+ V+ + P EE++P TA+VTP
Sbjct: 1336 AIKNASNPVRFVLQSLHTNQQNMINSASNSTVGSVRFENAKP--EEELPPTALVTP 1389
>DQ823041-1|ABH03415.1| 2166|Caenorhabditis elegans MPZ-1 protein.
Length = 2166
Score = 31.9 bits (69), Expect = 0.48
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = -3
Query: 492 ALNARTVPDRYPVRHIHDFAHNLSGSKVFSTIDLVKAYHQIPIAEEDVPKTAIVTP 325
A+ + P R+ ++ +H N+ S ST+ V+ + P EE++P TA+VTP
Sbjct: 1296 AIKNASNPVRFVLQSLHTNQQNMINSASNSTVGSVRFENAKP--EEELPPTALVTP 1349
>Z77660-9|CAB01179.1| 602|Caenorhabditis elegans Hypothetical
protein F38H4.7 protein.
Length = 602
Score = 31.5 bits (68), Expect = 0.64
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Frame = -3
Query: 528 KRRHLASCGDYR-ALNARTVP-DRYPVRHIHDFAHNLSGSKVFSTIDLVKAYHQIPIAEE 355
+RR + + GD R A+ +R++P R+P+ I +FA ++ S + S ++ K + + ++
Sbjct: 371 ERRGMPANGDSRRAVLSRSIPLIRFPLMKIDEFALHVEPSHILSDREMNKIFKYLAVSPP 430
Query: 354 DVP 346
D P
Sbjct: 431 DRP 433
>AL023828-27|CAI46622.1| 308|Caenorhabditis elegans Hypothetical
protein Y17G7B.23 protein.
Length = 308
Score = 31.5 bits (68), Expect = 0.64
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -2
Query: 337 NCYTV-WPLRIPIHDFWASKRGTDIPAIYDEVTRGLDFCFPYVDDILV 197
NC ++ + L IP+++ A RG ++DE + C YVDD+ V
Sbjct: 56 NCASMCFELMIPVNNKLAFVRGCHADFVWDEFASHNESCHQYVDDVTV 103
>Z92827-1|CAB07326.1| 394|Caenorhabditis elegans Hypothetical
protein C29F7.1 protein.
Length = 394
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/85 (21%), Positives = 31/85 (36%)
Frame = +1
Query: 97 PEYIWRG*LQLRILVDVRRGFEGVSDEDSHQLNERGCHQRRENRNQDPV*PHHKSLECLS 276
P+ +W + ++D + G +G ED H++ G N+ P+ H+
Sbjct: 260 PQILWDKDDNIAGIIDWQVGHQGSPMEDLHRILSTGTSVENRNKLTKPLLDHYFEKLSAG 319
Query: 277 RVSKPKSHEWEFEEAKRCNNCCLRH 351
K W EE N C +
Sbjct: 320 LEEKGVKMPWTREEVDEEYNHCFSY 344
>AC024860-3|AAK29985.1| 345|Caenorhabditis elegans Hypothetical
protein Y71H2AR.2 protein.
Length = 345
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Frame = -1
Query: 596 MVQSGTAR--PSKSAWSSPLHM--TIKKDDTWRHAAITGP 489
+VQ T+ P++ W +P+HM T ++ WR I GP
Sbjct: 57 LVQQRTSESLPTRFQWETPIHMDRTTEEFLDWREKGIVGP 96
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,815,911
Number of Sequences: 27780
Number of extensions: 397767
Number of successful extensions: 1000
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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