BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fprWP01_F_E16 (365 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical pr... 28 1.8 AC006696-8|AAF39989.1| 120|Caenorhabditis elegans Hypothetical ... 28 2.4 Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical pr... 27 3.1 Z71264-4|CAA95831.1| 348|Caenorhabditis elegans Hypothetical pr... 27 4.1 U80840-9|AAB37924.1| 289|Caenorhabditis elegans Hypothetical pr... 27 4.1 Z34533-5|CAA84298.1| 781|Caenorhabditis elegans Hypothetical pr... 26 9.5 AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear recep... 26 9.5 AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear recep... 26 9.5 AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear recep... 26 9.5 AF047660-8|AAM54167.1| 526|Caenorhabditis elegans Nuclear hormo... 26 9.5 AF047660-7|AAM54166.1| 577|Caenorhabditis elegans Nuclear hormo... 26 9.5 AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormo... 26 9.5 AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormo... 26 9.5 AC024755-7|AAO91688.1| 833|Caenorhabditis elegans Hypothetical ... 26 9.5 AC024755-6|AAF59639.1| 877|Caenorhabditis elegans Hypothetical ... 26 9.5 >U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical protein C25A8.4 protein. Length = 1067 Score = 28.3 bits (60), Expect = 1.8 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Frame = +1 Query: 199 LSFCTHLLYGYAGIQPDT-YKLVSLNENLDIDRTHDNYRAITSLKAKYPGSHCII 360 ++ CTHL+YG I DT Y S+++ ++ DN R L+ +P + ++ Sbjct: 48 ITTCTHLVYGSIPIDRDTGYPQYSVSD-VESGYDIDNIRTFMRLRKYHPNAKLLM 101 >AC006696-8|AAF39989.1| 120|Caenorhabditis elegans Hypothetical protein W08E12.2 protein. Length = 120 Score = 27.9 bits (59), Expect = 2.4 Identities = 9/14 (64%), Positives = 10/14 (71%) Frame = -2 Query: 151 HSSCCRSNKVLCCG 110 +SSCC SN CCG Sbjct: 88 YSSCCNSNNFSCCG 101 >Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical protein F59F3.5 protein. Length = 1199 Score = 27.5 bits (58), Expect = 3.1 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = -3 Query: 213 GAERQSGIEVQRQHAGLRFSDIAPAVVVTKYFAVGYRR 100 G QS E++++ +GLRF D + +V K + Y R Sbjct: 263 GYNNQSAHEIEKRSSGLRFGDPSSQDIVEKNTMLRYDR 300 >Z71264-4|CAA95831.1| 348|Caenorhabditis elegans Hypothetical protein K07G5.5 protein. Length = 348 Score = 27.1 bits (57), Expect = 4.1 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%) Frame = +1 Query: 154 RESQARMLPLDL--DPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHD 303 R+ AR+L + L D + + H + Y G+ + L+E L + THD Sbjct: 268 RDQLARILNITLKHDKRIKYIDHSMIYYTGLNAQVELHIVLDEKLPLRITHD 319 >U80840-9|AAB37924.1| 289|Caenorhabditis elegans Hypothetical protein F08D12.3a protein. Length = 289 Score = 27.1 bits (57), Expect = 4.1 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 5/70 (7%) Frame = -2 Query: 331 LSSW*SHGSCRVFGLCPGSRLRTPAYRCQAGYRHSRTASGCRTTERDRGPTA---AC--G 167 LS+ S VFG CP ++ + C+A + + + C+ E D GP A AC G Sbjct: 214 LSACKSSAGPAVFGSCPPGQVVVGSDCCEAKDVYDPSTATCQKNE-DVGPAAVDGACPAG 272 Query: 166 LEIL*HSSCC 137 + S CC Sbjct: 273 TSLTKGSVCC 282 >Z34533-5|CAA84298.1| 781|Caenorhabditis elegans Hypothetical protein B0285.7 protein. Length = 781 Score = 25.8 bits (54), Expect = 9.5 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +2 Query: 131 TTTAGAMSENLKPACCRWTSIPLCRSAPT 217 TTT+GA E++K + ++IP + PT Sbjct: 91 TTTSGAFDESVKNSEASTSTIPTTEAVPT 119 >AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear receptor NHR-66 protein. Length = 618 Score = 25.8 bits (54), Expect = 9.5 Identities = 12/33 (36%), Positives = 16/33 (48%) Frame = -2 Query: 226 RTASGCRTTERDRGPTAACGLEIL*HSSCCRSN 128 R S RTT+ +ACG + + H CR N Sbjct: 286 RVPSTLRTTQASTCMNSACGQKSVLHELICRQN 318 >AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear receptor NHR-66 protein. Length = 624 Score = 25.8 bits (54), Expect = 9.5 Identities = 12/33 (36%), Positives = 16/33 (48%) Frame = -2 Query: 226 RTASGCRTTERDRGPTAACGLEIL*HSSCCRSN 128 R S RTT+ +ACG + + H CR N Sbjct: 290 RVPSTLRTTQASTCMNSACGQKSVLHELICRQN 322 >AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear receptor NHR-66 protein. Length = 619 Score = 25.8 bits (54), Expect = 9.5 Identities = 12/33 (36%), Positives = 16/33 (48%) Frame = -2 Query: 226 RTASGCRTTERDRGPTAACGLEIL*HSSCCRSN 128 R S RTT+ +ACG + + H CR N Sbjct: 285 RVPSTLRTTQASTCMNSACGQKSVLHELICRQN 317 >AF047660-8|AAM54167.1| 526|Caenorhabditis elegans Nuclear hormone receptor familyprotein 66, isoform b protein. Length = 526 Score = 25.8 bits (54), Expect = 9.5 Identities = 12/33 (36%), Positives = 16/33 (48%) Frame = -2 Query: 226 RTASGCRTTERDRGPTAACGLEIL*HSSCCRSN 128 R S RTT+ +ACG + + H CR N Sbjct: 192 RVPSTLRTTQASTCMNSACGQKSVLHELICRQN 224 >AF047660-7|AAM54166.1| 577|Caenorhabditis elegans Nuclear hormone receptor familyprotein 66, isoform a protein. Length = 577 Score = 25.8 bits (54), Expect = 9.5 Identities = 12/33 (36%), Positives = 16/33 (48%) Frame = -2 Query: 226 RTASGCRTTERDRGPTAACGLEIL*HSSCCRSN 128 R S RTT+ +ACG + + H CR N Sbjct: 243 RVPSTLRTTQASTCMNSACGQKSVLHELICRQN 275 >AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormone receptor familyprotein 66, isoform d protein. Length = 659 Score = 25.8 bits (54), Expect = 9.5 Identities = 12/33 (36%), Positives = 16/33 (48%) Frame = -2 Query: 226 RTASGCRTTERDRGPTAACGLEIL*HSSCCRSN 128 R S RTT+ +ACG + + H CR N Sbjct: 325 RVPSTLRTTQASTCMNSACGQKSVLHELICRQN 357 >AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormone receptor familyprotein 66, isoform c protein. Length = 733 Score = 25.8 bits (54), Expect = 9.5 Identities = 12/33 (36%), Positives = 16/33 (48%) Frame = -2 Query: 226 RTASGCRTTERDRGPTAACGLEIL*HSSCCRSN 128 R S RTT+ +ACG + + H CR N Sbjct: 399 RVPSTLRTTQASTCMNSACGQKSVLHELICRQN 431 >AC024755-7|AAO91688.1| 833|Caenorhabditis elegans Hypothetical protein Y34B4A.4b protein. Length = 833 Score = 25.8 bits (54), Expect = 9.5 Identities = 9/28 (32%), Positives = 18/28 (64%) Frame = +1 Query: 268 LNENLDIDRTHDNYRAITSLKAKYPGSH 351 LN+++D+++ + + + L KYP SH Sbjct: 63 LNQDVDVNQIKFSLQEVGKLSTKYPKSH 90 >AC024755-6|AAF59639.1| 877|Caenorhabditis elegans Hypothetical protein Y34B4A.4a protein. Length = 877 Score = 25.8 bits (54), Expect = 9.5 Identities = 9/28 (32%), Positives = 18/28 (64%) Frame = +1 Query: 268 LNENLDIDRTHDNYRAITSLKAKYPGSH 351 LN+++D+++ + + + L KYP SH Sbjct: 63 LNQDVDVNQIKFSLQEVGKLSTKYPKSH 90 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,122,612 Number of Sequences: 27780 Number of extensions: 150630 Number of successful extensions: 443 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 432 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 443 length of database: 12,740,198 effective HSP length: 73 effective length of database: 10,712,258 effective search space used: 514188384 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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