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Last updated: 2022/09/19
 
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_B07
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family...    28   5.0  
U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family...    28   5.0  

>U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family
           protein 5, isoformb protein.
          Length = 1306

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 409 QRQYSYLRAPNVITDPPDPLTVLLS 335
           QR + YL  P +  DPP+P T  L+
Sbjct: 50  QRGFVYLNVPKIDADPPNPSTYQLN 74


>U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family
           protein 5, isoforma protein.
          Length = 1544

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 409 QRQYSYLRAPNVITDPPDPLTVLLS 335
           QR + YL  P +  DPP+P T  L+
Sbjct: 50  QRGFVYLNVPKIDADPPNPSTYQLN 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,735,586
Number of Sequences: 27780
Number of extensions: 309715
Number of successful extensions: 816
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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