SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c01r
         (476 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U20864-8|AAC46665.2|  330|Caenorhabditis elegans Peroxisome asse...    31   0.57 
Z69662-9|CAA93507.2| 1782|Caenorhabditis elegans Hypothetical pr...    30   0.99 
Z69662-8|CAA93506.2| 1776|Caenorhabditis elegans Hypothetical pr...    30   0.99 
Z68214-8|CAA92449.2| 1782|Caenorhabditis elegans Hypothetical pr...    30   0.99 
Z68214-7|CAA92448.2| 1776|Caenorhabditis elegans Hypothetical pr...    30   0.99 
AY396716-1|AAR29589.1| 1800|Caenorhabditis elegans DAF-15 protein.     30   0.99 
AL117202-22|CAB57900.1|  691|Caenorhabditis elegans Hypothetical...    29   1.7  
U70856-1|AAB09165.1|  327|Caenorhabditis elegans Hypothetical pr...    28   3.0  
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ...    28   3.0  
AF016450-2|AAB65983.1|  545|Caenorhabditis elegans Hypothetical ...    28   3.0  
Z77659-5|CAB01168.1|  953|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z74026-4|CAA98416.5|  774|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AF025463-1|AAB71008.3|  871|Caenorhabditis elegans Hypothetical ...    27   7.0  
Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical ...    27   9.2  

>U20864-8|AAC46665.2|  330|Caenorhabditis elegans Peroxisome
           assembly factor protein13 protein.
          Length = 330

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -1

Query: 200 WMLR*QNFLLVLINLKPKAY*NSARIRPGKTQP 102
           W+ R   +LLV++ LKP +Y ++A +  G +QP
Sbjct: 148 WVYRFWRWLLVMLKLKPASYASAAEMAWGTSQP 180


>Z69662-9|CAA93507.2| 1782|Caenorhabditis elegans Hypothetical protein
            C10C5.6b protein.
          Length = 1782

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = -3

Query: 453  MKSVVLICLAFAVFNCGADNVHLTETQKEKAKQYTSECVKESG--VSTEVINAAKTGQYS 280
            +++  +  L   + N    N H +  ++  A +  S+CV +S   V  E+I A +   + 
Sbjct: 822  VRAAAVFALGSLLRNSSRSNEHASAVEENLAGELCSQCVFDSSVLVREELIVALQWFVFD 881

Query: 279  EDKAFKKFVLCFFNK 235
             +K F KF+L   N+
Sbjct: 882  FEKRFVKFLLELSNQ 896


>Z69662-8|CAA93506.2| 1776|Caenorhabditis elegans Hypothetical protein
            C10C5.6a protein.
          Length = 1776

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = -3

Query: 453  MKSVVLICLAFAVFNCGADNVHLTETQKEKAKQYTSECVKESG--VSTEVINAAKTGQYS 280
            +++  +  L   + N    N H +  ++  A +  S+CV +S   V  E+I A +   + 
Sbjct: 822  VRAAAVFALGSLLRNSSRSNEHASAVEENLAGELCSQCVFDSSVLVREELIVALQWFVFD 881

Query: 279  EDKAFKKFVLCFFNK 235
             +K F KF+L   N+
Sbjct: 882  FEKRFVKFLLELSNQ 896


>Z68214-8|CAA92449.2| 1782|Caenorhabditis elegans Hypothetical protein
            C10C5.6b protein.
          Length = 1782

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = -3

Query: 453  MKSVVLICLAFAVFNCGADNVHLTETQKEKAKQYTSECVKESG--VSTEVINAAKTGQYS 280
            +++  +  L   + N    N H +  ++  A +  S+CV +S   V  E+I A +   + 
Sbjct: 822  VRAAAVFALGSLLRNSSRSNEHASAVEENLAGELCSQCVFDSSVLVREELIVALQWFVFD 881

Query: 279  EDKAFKKFVLCFFNK 235
             +K F KF+L   N+
Sbjct: 882  FEKRFVKFLLELSNQ 896


>Z68214-7|CAA92448.2| 1776|Caenorhabditis elegans Hypothetical protein
            C10C5.6a protein.
          Length = 1776

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = -3

Query: 453  MKSVVLICLAFAVFNCGADNVHLTETQKEKAKQYTSECVKESG--VSTEVINAAKTGQYS 280
            +++  +  L   + N    N H +  ++  A +  S+CV +S   V  E+I A +   + 
Sbjct: 822  VRAAAVFALGSLLRNSSRSNEHASAVEENLAGELCSQCVFDSSVLVREELIVALQWFVFD 881

Query: 279  EDKAFKKFVLCFFNK 235
             +K F KF+L   N+
Sbjct: 882  FEKRFVKFLLELSNQ 896


>AY396716-1|AAR29589.1| 1800|Caenorhabditis elegans DAF-15 protein.
          Length = 1800

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = -3

Query: 453  MKSVVLICLAFAVFNCGADNVHLTETQKEKAKQYTSECVKESG--VSTEVINAAKTGQYS 280
            +++  +  L   + N    N H +  ++  A +  S+CV +S   V  E+I A +   + 
Sbjct: 846  VRAAAVFALGSLLRNSSRSNEHASAVEENLAGELCSQCVFDSSVLVREELIVALQWFVFD 905

Query: 279  EDKAFKKFVLCFFNK 235
             +K F KF+L   N+
Sbjct: 906  FEKRFVKFLLELSNQ 920


>AL117202-22|CAB57900.1|  691|Caenorhabditis elegans Hypothetical
           protein Y47D3A.28 protein.
          Length = 691

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -3

Query: 390 HLTETQ-KEKAKQYTSECVKESGVSTEVINAAK-TGQYSEDKAFKK 259
           HLT  + +EK + +T+ CV+   V     N  K T Q++  +  KK
Sbjct: 574 HLTGMEEREKVETFTTTCVEVKNVKVVTCNQCKYTSQFASSECIKK 619


>U70856-1|AAB09165.1|  327|Caenorhabditis elegans Hypothetical
           protein F57F4.2 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 250 KHEFLKSFIFGVLSSLRCIYHF 315
           K+EFLKS I   L +L C+ HF
Sbjct: 231 KNEFLKSHIHSKLRNLMCMLHF 252


>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
           protein Y11D7A.14 protein.
          Length = 1464

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 345 ECVKESGVSTEVINAAKTGQYSEDKAFKKFVLCFFNKSAIL 223
           +CV  SGV  E +  A+T   S    F KF+   F++++ L
Sbjct: 203 DCVVTSGVLLEAMGNARTTHNSNSSRFGKFIRIEFDENSKL 243


>AF016450-2|AAB65983.1|  545|Caenorhabditis elegans Hypothetical
           protein B0238.1 protein.
          Length = 545

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 168 VNKSEAQSVLEQCKDKTGQDAADKAFEIFQCYY 70
           V K   ++ LE  +DK+G+    K  EIF  YY
Sbjct: 367 VVKKAVEAYLENIEDKSGEKIGKKLVEIFGDYY 399


>Z77659-5|CAB01168.1|  953|Caenorhabditis elegans Hypothetical
           protein F23B12.7 protein.
          Length = 953

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3

Query: 168 VNKSEAQSVLEQCKDKTGQDAA 103
           +N SE Q +LE+ KD+  QDAA
Sbjct: 118 MNASEIQKLLEEGKDEMAQDAA 139


>Z74026-4|CAA98416.5|  774|Caenorhabditis elegans Hypothetical
           protein B0240.2 protein.
          Length = 774

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +1

Query: 106 CVLPGLILALF*YALGFRF-INTRRKFC*RNIHVQCTI*VQDCGF 237
           C++PGL++  F Y L F +  N    F  R +  + T   QDC F
Sbjct: 420 CIMPGLLIWPFIYTLRFMYNYNYNDDFKNRFLTKEFTKIDQDCAF 464


>AF025463-1|AAB71008.3|  871|Caenorhabditis elegans Hypothetical
            protein K10B4.3 protein.
          Length = 871

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 24/99 (24%), Positives = 43/99 (43%)
 Frame = -3

Query: 378  TQKEKAKQYTSECVKESGVSTEVINAAKTGQYSEDKAFKKFVLCFFNKSAILNSDGTLNM 199
            T  EK K +  E   E  +  ++    K G++   +  K++   +F  S+   +  T +M
Sbjct: 742  TNPEKVKYFVEEGGAEKVLEGQL--KEKKGRW---RFLKRWNTKYFTLSSAALNYSTQHM 796

Query: 198  DVALAKLPPGVNKSEAQSVLEQCKDKTGQDAADKAFEIF 82
                  L P ++    +SV    + K  + +  KAFEIF
Sbjct: 797  PTDSRALLPSIDLRSIRSVRSLGRGKKARKSLRKAFEIF 835


>Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical
           protein F48F5.1 protein.
          Length = 1291

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 186 AKLPPGVNKSEAQSVLEQCKDKTGQDAADK 97
           AKL     KSEA+ V E+ KD+  Q   DK
Sbjct: 876 AKLRADQEKSEARKVAEKKKDEQNQKEKDK 905


>AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical
           protein K09F6.3 protein.
          Length = 1360

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -3

Query: 255 VLCFFNKSAILNSDGTLNMDVALAKLPPGVNKSEAQSVLEQCKDKTGQDAADK 97
           V+CF+ ++ I N D      +   K+   +   EAQ++  + K K  +D   K
Sbjct: 806 VVCFYKRNKIANDDMEQGTKIEKEKIARELAAQEAQNIEAEKKKKEIKDLEAK 858


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,191,305
Number of Sequences: 27780
Number of extensions: 186770
Number of successful extensions: 574
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -