Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10b12r
(565 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-13|CAB02101.1| 153|Caenorhabditis elegans Hypothetical p... 203 6e-53
AC006644-2|AAF39837.1| 118|Caenorhabditis elegans Hypothetical ... 69 3e-12
AC025721-13|AAR85897.1| 139|Caenorhabditis elegans Hypothetical... 44 6e-05
U29382-6|AAF99998.1| 379|Caenorhabditis elegans Hypothetical pr... 27 7.0
L14710-6|AAA28079.1| 227|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z81129-6|CAB03412.1| 799|Caenorhabditis elegans Hypothetical pr... 27 9.3
Z81129-5|CAB03411.1| 779|Caenorhabditis elegans Hypothetical pr... 27 9.3
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr... 27 9.3
>Z79754-13|CAB02101.1| 153|Caenorhabditis elegans Hypothetical
protein F25H2.5 protein.
Length = 153
Score = 203 bits (496), Expect = 6e-53
Identities = 94/149 (63%), Positives = 114/149 (76%), Gaps = 1/149 (0%)
Frame = -3
Query: 482 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 303
ERTFI +KPDGV RGLVG II RFE++G+KLV LK + S+ L+ HY DL +PFFP L
Sbjct: 5 ERTFIAIKPDGVHRGLVGKIIARFEERGYKLVALKQMTASKAHLEVHYQDLKDKPFFPSL 64
Query: 302 VKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVE 123
++YMSSGPVV MVW+GL+VVK GR MLGATNP S PGTIRGD CIQ GRNI HGSD+V+
Sbjct: 65 IEYMSSGPVVAMVWQGLDVVKQGRSMLGATNPLASAPGTIRGDFCIQTGRNICHGSDAVD 124
Query: 122 SAKKEIGLWFTDKEVVGW-TPANENWVYE 39
SA +EI WF +E+ + +P +WVYE
Sbjct: 125 SANREIAHWFKQEEINDYASPFINSWVYE 153
>AC006644-2|AAF39837.1| 118|Caenorhabditis elegans Hypothetical
protein F55A3.6 protein.
Length = 118
Score = 68.5 bits (160), Expect = 3e-12
Identities = 37/79 (46%), Positives = 48/79 (60%)
Frame = -3
Query: 323 RPFFPGLVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNII 144
+PFFP L+ YMSSGPVV M+WEG +VVK R +LG + +I DL ++
Sbjct: 33 KPFFPLLIDYMSSGPVVAMLWEGCDVVKRARVILGEELEV-GEFRSIFYDLVVRDTHKGC 91
Query: 143 HGSDSVESAKKEIGLWFTD 87
H SDSV SA +E LWF +
Sbjct: 92 HCSDSVASANREYVLWFEE 110
>AC025721-13|AAR85897.1| 139|Caenorhabditis elegans Hypothetical
protein Y48G8AL.15 protein.
Length = 139
Score = 44.4 bits (100), Expect = 6e-05
Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 1/126 (0%)
Frame = -3
Query: 470 IMVKPDGV-QRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGLVKY 294
+++KP+ V R L + G ++ ++ + S L +Q Y+ + F+ LV++
Sbjct: 14 VVLKPEIVAHRVLAQVALSELRSNGIEIEEMRQMKISGSLAKQLYAQHQGKFFYDRLVRH 73
Query: 293 MSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVESAK 114
+SSGPV+ M G G L QP IR + RN+ H SD ++A+
Sbjct: 74 ISSGPVIAMRVSGNARKCIGSSRLWPRLEPTVQP--IRQRFALSDVRNVAHASDE-DAAE 130
Query: 113 KEIGLW 96
KE+ L+
Sbjct: 131 KELQLF 136
>U29382-6|AAF99998.1| 379|Caenorhabditis elegans Hypothetical
protein R03H10.1 protein.
Length = 379
Score = 27.5 bits (58), Expect = 7.0
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = -3
Query: 356 LLQQHYSDLASRPFFPGLVKYMSSGPVVPMVW 261
LL + + ++ S +PG V+++ P++P W
Sbjct: 144 LLDRCWKNVDSMELYPGTVQFLDKLPIIPSNW 175
>L14710-6|AAA28079.1| 227|Caenorhabditis elegans Hypothetical
protein K02D10.4 protein.
Length = 227
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 435 CGHHY*TFRKERLQTSRFEIRMAIRRTSP 349
CGH R +T +FE R+ ++R+SP
Sbjct: 107 CGHPVEVDDHHRRETKKFENRLTLKRSSP 135
>Z81129-6|CAB03412.1| 799|Caenorhabditis elegans Hypothetical
protein T23F1.7b protein.
Length = 799
Score = 27.1 bits (57), Expect = 9.3
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = -3
Query: 338 SDLASRPFFPGLVKYMSSGPVVPMVWEGLNVVKTG--RQMLGATNPADSQPGTIR 180
SDL S + + + VV WEG+ +V+ G R + G N A+ P R
Sbjct: 66 SDLRSLRYPYAEFAFTDNNAVVMQSWEGVEIVEDGVSRLIFGRENGAEITPSADR 120
>Z81129-5|CAB03411.1| 779|Caenorhabditis elegans Hypothetical
protein T23F1.7a protein.
Length = 779
Score = 27.1 bits (57), Expect = 9.3
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = -3
Query: 338 SDLASRPFFPGLVKYMSSGPVVPMVWEGLNVVKTG--RQMLGATNPADSQPGTIR 180
SDL S + + + VV WEG+ +V+ G R + G N A+ P R
Sbjct: 66 SDLRSLRYPYAEFAFTDNNAVVMQSWEGVEIVEDGVSRLIFGRENGAEITPSADR 120
>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical protein
F12F6.6 protein.
Length = 1126
Score = 27.1 bits (57), Expect = 9.3
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = -3
Query: 329 ASRPFFPGLVKYMSSGPVVPMVWEGLNVVKTGRQML---GATNPADSQPGTI 183
AS F Y+ V+ VW G +T Q + GATN D++ GTI
Sbjct: 1003 ASSEFLENSKAYIIDNGVILFVWVGSACPQTWVQDVFGVGATNQIDTESGTI 1054
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,068,362
Number of Sequences: 27780
Number of extensions: 269165
Number of successful extensions: 787
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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