Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0069
         (737 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical pr...    33   0.16 
U00035-5|AAA50643.1|  104|Caenorhabditis elegans Hypothetical pr...    31   0.85 
Z74045-1|CAA98552.1|  535|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U29097-3|AAM98030.1|  292|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AC024817-48|AAM97976.1|  401|Caenorhabditis elegans Hypothetical...    30   2.0  
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    30   2.0  
Z68299-4|CAD60422.2|  367|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U58750-6|AAB00646.1| 2049|Caenorhabditis elegans Rod (drosophila...    29   2.6  
AF043693-3|AAB97537.1|  207|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z48582-1|CAA88465.1|  490|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U80437-5|AAV58881.1|  527|Caenorhabditis elegans Neurabin protei...    29   4.5  
U80437-3|AAK68243.1|  561|Caenorhabditis elegans Neurabin protei...    29   4.5  
U80437-2|AAL16317.1|  658|Caenorhabditis elegans Neurabin protei...    29   4.5  
U80437-1|AAB37620.1|  721|Caenorhabditis elegans Neurabin protei...    29   4.5  
Z71177-4|CAA94870.1|  529|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z70752-5|CAA94758.1|  901|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z70750-16|CAA94750.1|  901|Caenorhabditis elegans Hypothetical p...    28   7.9  
AF077530-1|AAC26266.1|  441|Caenorhabditis elegans Hypothetical ...    28   7.9  

>U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical
           protein D1044.6 protein.
          Length = 1009

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +3

Query: 402 KSKNRDVPFIIPEKIEKVQSKKEDIIQKIVTPKVPQNQQRPKSPQ 536
           +S++ D   IIP KIEK   K     + +V  KV   ++RP+SP+
Sbjct: 297 ESESDDSVIIIPRKIEK--EKPRPTTENVVLKKVEMEKKRPRSPE 339


>U00035-5|AAA50643.1|  104|Caenorhabditis elegans Hypothetical
           protein R01H2.1 protein.
          Length = 104

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
 Frame = +2

Query: 344 SRRKRSTE*PISCLPRKPFEIKE---QRCTVYNSGKNRKSSVQ-KGRHNPKNCH 493
           +R +R+      C  RKP+EI++   +R +      N+ +S++ +GR NP   H
Sbjct: 49  NRAERTQRFQTQCSKRKPYEIRQGIPERSSSKQDPGNKTASIEHRGRENPSETH 102


>Z74045-1|CAA98552.1|  535|Caenorhabditis elegans Hypothetical
           protein T27F2.1 protein.
          Length = 535

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = +3

Query: 408 KNRDVPFIIPEKIEKVQSKKE-DIIQKIVTPKVPQNQQRPKSPQTSRPLL-KTE 563
           K R++    P+K +K++ ++E DI +KIV      NQ+R   PQ  + L  KT+
Sbjct: 368 KERNIARSRPDKADKLRKERERDISEKIVLGLPDTNQKRTGEPQFDQRLFDKTQ 421


>U29097-3|AAM98030.1|  292|Caenorhabditis elegans Hypothetical
           protein F18C5.10 protein.
          Length = 292

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
 Frame = +1

Query: 73  LHDLVLAFVECGRLRQARRILETPGLQARHRRLDDACQRYVEEGKSEYLEGLLEATKELS 252
           L+D ++ F    ++ Q  R ++  G+   + R+D A  RY  +G  +Y + L      + 
Sbjct: 69  LNDFLVKFAAVDQMAQDARYIKPSGI---NHRMDMASVRYTFQGFIDYKKNLWMTVGAMC 125

Query: 253 QLIAQTSS--TIYS 288
             +A T+S  TIYS
Sbjct: 126 ASLATTASLLTIYS 139


>AC024817-48|AAM97976.1|  401|Caenorhabditis elegans Hypothetical
           protein Y54G2A.35 protein.
          Length = 401

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 190 IADKRHPSVCVE-PAILVFREYDVPVSVFRTQRTQVLNHV 74
           + +K H S  V+ PAI  F  + V   V   ++T ++NH+
Sbjct: 250 VVEKHHKSSAVDAPAIRSFLTHTVVFGVLEAKKTNIINHI 289


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
 Frame = +3

Query: 306  DETDKALGLWTLLQEESEVPS----NQFLVYLGNHLKSKNRDVPFIIPEKIEKVQSKKED 473
            +E DK  G++  L++ +++P+    N+ L  +   L S  +D       K+E ++  K D
Sbjct: 2695 EEDDKLAGVYDELEKIAKLPARDYDNKLLAKIDEKLNSLPKDQIAETHRKVEDIKVTKAD 2754

Query: 474  IIQKI-VTPKVP 506
            I+ +I V  K+P
Sbjct: 2755 IVAQIDVLDKLP 2766


>Z68299-4|CAD60422.2|  367|Caenorhabditis elegans Hypothetical
           protein T04B2.7 protein.
          Length = 367

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 405 SKNRDVPFIIPEKIE-KVQSKKEDIIQKIVTPKVP 506
           SK  DVP  IP+KIE K + ++  + +++  P  P
Sbjct: 127 SKTEDVPVKIPKKIEAKKEEQEASVFEEVAGPAAP 161


>U58750-6|AAB00646.1| 2049|Caenorhabditis elegans Rod (drosophila
            roughdeal) homologprotein 1 protein.
          Length = 2049

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = +2

Query: 527  ISTNIEALVKDGNLAQAMDVLLKSIE-VGTMPKSNVVKYLLKNLAEEG 667
            + ++ +A ++   LA  M +L +++E V T+  +   KYL+K LAEEG
Sbjct: 1348 VRSSTKATIQYLQLAFVMSLLARNMEKVPTIVSAYEQKYLVKKLAEEG 1395


>AF043693-3|AAB97537.1|  207|Caenorhabditis elegans Hypothetical
           protein C34B2.5 protein.
          Length = 207

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
 Frame = +2

Query: 398 FEIKEQRCTVYNS----GKNRKSSVQKGRHNPKNCHT*STSKPTKAEI-----STNIEAL 550
           FE +E + T  +S    G N  ++ +  + N K     ++  PT  E+     S +  AL
Sbjct: 8   FEDEEDQITKVDSLKKEGNNFFANGEFEKANEKYQEAIASCPPTSTEVQSILLSNSAAAL 67

Query: 551 VKDGNLAQAMDVLLKSIEVGTMPKSNVVK--YLLKNLAE--EGNVEKIQQLGKNISENTK 718
           +K      A++   KSIE+G   +  + +  +   N++E  E ++E  +QL +++    K
Sbjct: 68  IKLRKWESAVEAASKSIEIGATNEKALERRAFAYSNMSEKYENSIEDYKQLQESL---PK 124

Query: 719 RKVTYD 736
           R+V  D
Sbjct: 125 RRVELD 130


>Z48582-1|CAA88465.1|  490|Caenorhabditis elegans Hypothetical
           protein F27E5.3 protein.
          Length = 490

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +3

Query: 408 KNRDVPFIIPEKIEKVQSKKEDIIQKIVTPKVPQNQQRPKSPQTSRPLLKTETWHKQWTS 587
           K  D  F    K ++ +   +D  QK+    +PQ   +P S Q   P+L  + +H Q TS
Sbjct: 198 KKHDSRFAYLPKNQRPRQVSDDETQKLTPIFLPQ-PYKPSSQQGPPPMLTRQPFHAQKTS 256


>U80437-5|AAV58881.1|  527|Caenorhabditis elegans Neurabin protein
           1, isoform e protein.
          Length = 527

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 124 RRILETPGLQARHRRLDDACQRYVEEGKSEYL 219
           R   +  GLQA H  +DD CQ  V  G  +Y+
Sbjct: 428 RATCQPVGLQALHWTVDDVCQLLVSMGLDKYV 459


>U80437-3|AAK68243.1|  561|Caenorhabditis elegans Neurabin protein
           1, isoform b protein.
          Length = 561

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 124 RRILETPGLQARHRRLDDACQRYVEEGKSEYL 219
           R   +  GLQA H  +DD CQ  V  G  +Y+
Sbjct: 462 RATCQPVGLQALHWTVDDVCQLLVSMGLDKYV 493


>U80437-2|AAL16317.1|  658|Caenorhabditis elegans Neurabin protein
           1, isoform d protein.
          Length = 658

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 124 RRILETPGLQARHRRLDDACQRYVEEGKSEYL 219
           R   +  GLQA H  +DD CQ  V  G  +Y+
Sbjct: 559 RATCQPVGLQALHWTVDDVCQLLVSMGLDKYV 590


>U80437-1|AAB37620.1|  721|Caenorhabditis elegans Neurabin protein
           1, isoform a protein.
          Length = 721

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 124 RRILETPGLQARHRRLDDACQRYVEEGKSEYL 219
           R   +  GLQA H  +DD CQ  V  G  +Y+
Sbjct: 622 RATCQPVGLQALHWTVDDVCQLLVSMGLDKYV 653


>Z71177-4|CAA94870.1|  529|Caenorhabditis elegans Hypothetical
           protein AC3.7 protein.
          Length = 529

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = +3

Query: 237 NERTFSIDRSNIFYHLLVTYCNADETDKALGLWTLLQEESEVPSNQF---LVYLGNHLK 404
           N  T +I  S + Y  + T C     DK L  W L +      S  F    +YLG+HLK
Sbjct: 103 NPITGAIATSTVLYGEMKTMCEKVLLDKKLHKWILSKNFDGFISEPFDFCGLYLGDHLK 161


>Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical protein
            C38D4.3 protein.
          Length = 1784

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 435  PEKIEKVQSKKEDIIQKIVTPKVPQNQQRPKS 530
            PEK EK Q + E  + + V P+ PQN+    S
Sbjct: 1284 PEKTEKRQEEPEPEVMQPVIPEEPQNESLESS 1315


>Z70752-5|CAA94758.1|  901|Caenorhabditis elegans Hypothetical
           protein F25B3.1 protein.
          Length = 901

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/62 (20%), Positives = 28/62 (45%)
 Frame = +3

Query: 435 PEKIEKVQSKKEDIIQKIVTPKVPQNQQRPKSPQTSRPLLKTETWHKQWTSCLNRLK*AP 614
           P K ++++ +  D+I+K  TP    N ++    +  R  ++     KQ  + +     +P
Sbjct: 549 PSKRDELRQRARDLIEKSTTPAATPNSRKASDEERRREEVRRMLNEKQHPTAIPSTSSSP 608

Query: 615 CP 620
            P
Sbjct: 609 YP 610


>Z70750-16|CAA94750.1|  901|Caenorhabditis elegans Hypothetical
           protein F25B3.1 protein.
          Length = 901

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/62 (20%), Positives = 28/62 (45%)
 Frame = +3

Query: 435 PEKIEKVQSKKEDIIQKIVTPKVPQNQQRPKSPQTSRPLLKTETWHKQWTSCLNRLK*AP 614
           P K ++++ +  D+I+K  TP    N ++    +  R  ++     KQ  + +     +P
Sbjct: 549 PSKRDELRQRARDLIEKSTTPAATPNSRKASDEERRREEVRRMLNEKQHPTAIPSTSSSP 608

Query: 615 CP 620
            P
Sbjct: 609 YP 610


>AF077530-1|AAC26266.1|  441|Caenorhabditis elegans Hypothetical
           protein C40D2.3 protein.
          Length = 441

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -2

Query: 169 SVCVEPAILVFREYDVPVSVFRTQRTQVLNH 77
           S+CVE  + + +  ++P ++  T R  VL+H
Sbjct: 258 SICVEAHVKICKTQELPCNILSTHRKFVLSH 288


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,857,932
Number of Sequences: 27780
Number of extensions: 362192
Number of successful extensions: 1339
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1336
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)