Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0116
(634 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024877-2|AAF60905.2| 608|Caenorhabditis elegans Hypothetical ... 32 0.39
Z81135-1|CAB03453.1| 627|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z73969-6|CAA98236.1| 295|Caenorhabditis elegans Hypothetical pr... 30 1.6
AY438643-1|AAR00670.1| 627|Caenorhabditis elegans abnormal DAue... 30 1.6
Z81568-10|CAB04600.1| 441|Caenorhabditis elegans Hypothetical p... 29 2.8
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 29 2.8
U55856-7|AAA98025.1| 249|Caenorhabditis elegans Hypothetical pr... 29 3.7
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 29 3.7
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 3.7
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 29 3.7
AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical... 28 4.8
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z72512-6|CAD44143.2| 657|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z68336-6|CAE17801.1| 204|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr... 28 6.4
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 28 6.4
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 28 6.4
AL023838-4|CAA19504.1| 218|Caenorhabditis elegans Hypothetical ... 28 6.4
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 27 8.4
U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical pr... 27 8.4
>AC024877-2|AAF60905.2| 608|Caenorhabditis elegans Hypothetical
protein Y95B8A.7 protein.
Length = 608
Score = 31.9 bits (69), Expect = 0.39
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 161 LQESEIDSPVGTPQPPAIPNQVSP--PGPIPTQTFTNQHYVQLPGGRV 298
L+ +++ +G P P +P ++P GP T+ H LPGG++
Sbjct: 43 LKTAQLHKKLGKPVPEDVPTIIAPGADGPTETKAKPKWHQQALPGGKI 90
>Z81135-1|CAB03453.1| 627|Caenorhabditis elegans Hypothetical
protein W01G7.1 protein.
Length = 627
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 110 PQQRPITEV-IGSQNFFFLQESEIDSPVGTPQPPAIPNQVSPPGPIPT 250
P+ P+ + +G+ NF L + I S + P P P VS P P+ T
Sbjct: 526 PKPAPVQPISLGNINFVALAQQLIASGIKLPLPIVTPPVVSTPAPVIT 573
>Z73969-6|CAA98236.1| 295|Caenorhabditis elegans Hypothetical
protein C12D8.8 protein.
Length = 295
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Frame = +2
Query: 71 LQEVEHAYFAQQYPQQRPITEVIGS--QNFFFLQE---SEIDSPVGTPQPPAIPNQVSPP 235
L +V+ + YP+ P + +I Q+F L E E P+ P PP P Q
Sbjct: 58 LMDVQISVSPPSYPRDHPFSSIIRQKRQSFASLPEWCQCEPTKPICPPGPPGQPGQQGQK 117
Query: 236 GP 241
GP
Sbjct: 118 GP 119
>AY438643-1|AAR00670.1| 627|Caenorhabditis elegans abnormal DAuer
Formation DAF-5,a Ski oncogene homolog involved in a
neuronal TGF betapathway (71.0 kD) (daf-5) protein.
Length = 627
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 110 PQQRPITEV-IGSQNFFFLQESEIDSPVGTPQPPAIPNQVSPPGPIPT 250
P+ P+ + +G+ NF L + I S + P P P VS P P+ T
Sbjct: 526 PKPAPVQPISLGNINFVALAQQLIASGIKLPLPIVTPPVVSTPAPVIT 573
>Z81568-10|CAB04600.1| 441|Caenorhabditis elegans Hypothetical
protein K08E3.8 protein.
Length = 441
Score = 29.1 bits (62), Expect = 2.8
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Frame = +2
Query: 77 EVEHAYFAQQYPQQRPITEVIGSQNFFFLQESEIDSPVGTPQPPAIP--NQVSPPGPIPT 250
++EH Y PQQ+ ++ Q+ Q I P P +IP S GP
Sbjct: 161 QMEHQYPMHLQPQQQTLSRPGSQQSQHIQQPGSIQRPGSVLAPGSIPPGGPASQTGPQSI 220
Query: 251 QTFTNQHYVQLPG 289
Q F VQ PG
Sbjct: 221 QVF-GPGSVQPPG 232
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +2
Query: 164 QESEIDSPVGTPQPPAIPNQVSPPGPIPTQ 253
+ES D P GT P P Q PP P P Q
Sbjct: 211 EESLDDKPSGTKMPAQPPPQQHPPPPQPQQ 240
>U55856-7|AAA98025.1| 249|Caenorhabditis elegans Hypothetical
protein F31E8.1 protein.
Length = 249
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +2
Query: 155 FFLQESEIDSPVGTPQPPAIP-NQVSPPGPIPTQTFTNQHYVQLPGGRV 298
FFL+ D + P P + + SPP P P T + LP G++
Sbjct: 72 FFLRHGVTDGELLPPAPNLVTLRKESPPAPSPPSRVTPIRHSPLPAGKL 120
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 185 PVGTPQPPAIPNQVSPPGP 241
P G P PP P PPGP
Sbjct: 230 PAGPPGPPGAPGNDGPPGP 248
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 176 IDSPVGTPQPPAIPNQVSPPGPIPTQTFTNQ 268
+ +PV P P IP V PP P T T + Q
Sbjct: 1113 VAAPVPVPTPFTIPPPVPPPPPTATSTQSQQ 1143
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 185 PVGTPQPPAIPNQVSPPGP 241
P G P PP P PPGP
Sbjct: 230 PAGPPGPPGAPGNDGPPGP 248
>AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical
protein W03F11.4 protein.
Length = 1406
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 155 FFLQESEIDSPVGTPQPPAIPNQVSPPGPIP 247
FFLQ + P+ T PP PN PP P P
Sbjct: 811 FFLQYASNSQPLSTLPPPPPPN--PPPAPQP 839
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 185 PVGTPQPPAIPNQVSPPGP 241
P G P PP P PPGP
Sbjct: 228 PPGPPGPPGAPGNDGPPGP 246
>Z72512-6|CAD44143.2| 657|Caenorhabditis elegans Hypothetical
protein R07B5.9 protein.
Length = 657
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/43 (37%), Positives = 17/43 (39%)
Frame = +2
Query: 137 IGSQNFFFLQESEIDSPVGTPQPPAIPNQVSPPGPIPTQTFTN 265
I QN LQ + SP P P V PP P P T N
Sbjct: 493 IEQQNQLMLQHHQFSSPPAAPPPSQQQQVVQPPIP-PAPTTAN 534
>Z68336-6|CAE17801.1| 204|Caenorhabditis elegans Hypothetical
protein F22B3.9 protein.
Length = 204
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 164 QESEIDSPVGTPQPPAIPNQVSPPGPIPTQTFTNQHYVQLPGGR 295
Q S+I + P PP + SP G HY+Q+PGG+
Sbjct: 25 QLSQIRISLDPPSPPFL--SPSPLGDYRVNDEPRMHYLQVPGGQ 66
>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical protein
C46C2.1b protein.
Length = 1677
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 167 ESEIDSPVGTPQPPAIPNQVSPPGPIPT 250
ES I S + TP P P S P P+P+
Sbjct: 1229 ESGISSSISTPHPEPTPAITSCPPPVPS 1256
>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical protein
C46C2.1a protein.
Length = 1838
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 167 ESEIDSPVGTPQPPAIPNQVSPPGPIPT 250
ES I S + TP P P S P P+P+
Sbjct: 1229 ESGISSSISTPHPEPTPAITSCPPPVPS 1256
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 185 PVGTPQPPAIPNQVSPPGP 241
P G P PP P PPGP
Sbjct: 223 PPGPPGPPGAPGNDGPPGP 241
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 185 PVGTPQPPAIPNQVSPPGP 241
P G P PP P PPGP
Sbjct: 223 PPGPPGPPGAPGNDGPPGP 241
>AL023838-4|CAA19504.1| 218|Caenorhabditis elegans Hypothetical
protein Y43C5A.4 protein.
Length = 218
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 164 QESEIDSPVGTPQP-PAIPNQVSPPGPIP 247
++ + +P G P P PA+P + SP P+P
Sbjct: 140 KKDDFFAPPGAPDPVPAVPVEPSPAPPVP 168
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 182 SPVGTPQPPAIPNQVSPPGP 241
+P G P PP P PPGP
Sbjct: 222 APPGPPGPPGPPGPQGPPGP 241
>U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical protein
B0416.1 protein.
Length = 1203
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 164 QESEIDSPVGTPQPPAIPNQVSPPGPIPTQ 253
Q+SE S TP+PP +SPP P++
Sbjct: 1146 QQSESGSKPSTPRPPRFRISMSPPRKPPSE 1175
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,791,324
Number of Sequences: 27780
Number of extensions: 243862
Number of successful extensions: 1699
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1686
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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