BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0016 (715 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U23139-15|AAK31488.1| 387|Caenorhabditis elegans Hypothetical p... 331 3e-91 AL132860-11|CAB60517.1| 440|Caenorhabditis elegans Hypothetical... 44 1e-04 AF069986-1|AAC39136.1| 440|Caenorhabditis elegans nitrilase and... 44 1e-04 Z35604-6|CAA84681.1| 305|Caenorhabditis elegans Hypothetical pr... 33 0.27 Z81079-3|CAB03083.2| 588|Caenorhabditis elegans Hypothetical pr... 29 4.4 AL161712-13|CAC70137.1| 830|Caenorhabditis elegans Hypothetical... 28 5.8 >U23139-15|AAK31488.1| 387|Caenorhabditis elegans Hypothetical protein F13H8.7 protein. Length = 387 Score = 331 bits (814), Expect = 3e-91 Identities = 149/237 (62%), Positives = 184/237 (77%) Frame = +3 Query: 3 FEIKAYDFPARKEECRKPRIVRLGLIQHSIAISTDNPITQQRLAIFEKVQKIISAAAAEQ 182 F++ Y A+KE+ R PR+VR+ IQ+ I T + + +QR AI ++V +I AAA+ Sbjct: 54 FQLSGYIVDAQKEQTRAPRLVRVAAIQNKIHRPTTDSVVEQRDAIHQRVGAMIEAAASAG 113 Query: 183 VNILCLQEAWNMPFAFCTREKQPWCDFAEPVLTGPSTVFLAELAVKYDMVIISPILERDD 362 N++ LQEAW MPFAFCTRE+ PW +FAE V TGP+T FL++LAVK+D+VIISPILERD+ Sbjct: 114 ANVIGLQEAWTMPFAFCTRERLPWTEFAESVYTGPTTQFLSKLAVKHDIVIISPILERDE 173 Query: 363 IHGDTIWNTAVVINEFGKVIGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETKYGKVAIN 542 D IWNTAVVI+ G+VIG+ RKNHIPRVGDFNESTYY E GHPVFETKYG++ IN Sbjct: 174 EKDDVIWNTAVVISHTGRVIGRSRKNHIPRVGDFNESTYYMESTLGHPVFETKYGRIGIN 233 Query: 543 ICYGRHHPLNWLMFGINGAEIVFNPSATVSGLSEHLWAVEARNAAIANSYYTCAINR 713 ICYGRHHP NW+M+ +NGAEI+FNPSATV LSE LW +EARNAAIAN +T INR Sbjct: 234 ICYGRHHPQNWMMYALNGAEIIFNPSATVGALSEPLWGIEARNAAIANHVFTVGINR 290 >AL132860-11|CAB60517.1| 440|Caenorhabditis elegans Hypothetical protein Y56A3A.13 protein. Length = 440 Score = 43.6 bits (98), Expect = 1e-04 Identities = 37/139 (26%), Positives = 58/139 (41%), Gaps = 6/139 (4%) Frame = +3 Query: 306 ELAVKYDMVI-ISPILERDDIHGDTIWNTAVVINEFGKVIGKHRKNH-----IPRVGDFN 467 ELA K+++ + + + +D WNT ++I+ G ++ K H IP Sbjct: 83 ELARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHLFDLEIPGKVRLM 142 Query: 468 ESTYYFEGNTGHPVFETKYGKVAINICYGRHHPLNWLMFGINGAEIVFNPSATVSGLSEH 647 ES + G P +T G++ ++ICY P L GA+++ PSA Sbjct: 143 ESEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPELSLWNRKRGAQLLSFPSAFTLNTGLA 202 Query: 648 LWAVEARNAAIANSYYTCA 704 W R AI N Y A Sbjct: 203 HWETLLRARAIENQCYVVA 221 >AF069986-1|AAC39136.1| 440|Caenorhabditis elegans nitrilase and fragile histidinetriad fusion protein NitFhit protein. Length = 440 Score = 43.6 bits (98), Expect = 1e-04 Identities = 37/139 (26%), Positives = 58/139 (41%), Gaps = 6/139 (4%) Frame = +3 Query: 306 ELAVKYDMVI-ISPILERDDIHGDTIWNTAVVINEFGKVIGKHRKNH-----IPRVGDFN 467 ELA K+++ + + + +D WNT ++I+ G ++ K H IP Sbjct: 83 ELARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHLFDLEIPGKVRLM 142 Query: 468 ESTYYFEGNTGHPVFETKYGKVAINICYGRHHPLNWLMFGINGAEIVFNPSATVSGLSEH 647 ES + G P +T G++ ++ICY P L GA+++ PSA Sbjct: 143 ESEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPELSLWNRKRGAQLLSFPSAFTLNTGLA 202 Query: 648 LWAVEARNAAIANSYYTCA 704 W R AI N Y A Sbjct: 203 HWETLLRARAIENQCYVVA 221 >Z35604-6|CAA84681.1| 305|Caenorhabditis elegans Hypothetical protein ZK1058.6 protein. Length = 305 Score = 32.7 bits (71), Expect = 0.27 Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 14/160 (8%) Frame = +3 Query: 132 AIFEKVQKIISAAAAEQVNILCLQEA-------WN-MPFAFCTREKQPWCDFA---EPVL 278 A EKV+K + AA ++ EA WN TR + +F E + Sbjct: 18 ATLEKVKKNVEEAAGNGAELVLFPEAFIGGYPKWNSFGITMGTRTPEGRKEFKRYFENAI 77 Query: 279 --TGPSTVFLAELAVKYDMVIISPILERDDIHGDTIWNTAVVINEFGKVIGKHRKNHIPR 452 G + + LA + ++ I+ ++ER+ T++ + + G +GKHRK +P Sbjct: 78 EENGEESKLIESLAAQNNIHIVIGVVERE---ASTLYCSVFFYSPSG-YLGKHRKL-LPT 132 Query: 453 VGDFNESTYYFEGN-TGHPVFETKYGKVAINICYGRHHPL 569 E + +G+ + PVF T GK+ IC+ + PL Sbjct: 133 A---LERCVWGQGDGSTMPVFSTSVGKIGSAICWENYMPL 169 >Z81079-3|CAB03083.2| 588|Caenorhabditis elegans Hypothetical protein F39H11.3 protein. Length = 588 Score = 28.7 bits (61), Expect = 4.4 Identities = 12/25 (48%), Positives = 18/25 (72%) Frame = -2 Query: 525 HILFQILDDQYYLQNNM*IH*NLQP 451 +ILFQIL +YL +N +H +L+P Sbjct: 137 NILFQILSGMHYLHSNWVLHRDLKP 161 >AL161712-13|CAC70137.1| 830|Caenorhabditis elegans Hypothetical protein Y66D12A.17 protein. Length = 830 Score = 28.3 bits (60), Expect = 5.8 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Frame = +3 Query: 27 PARKEECRKPRIVRL-GLIQHSIAISTDNPITQQRLAIFEKVQKIISA 167 P +K + R RIV L L H++ T P+T ++AIF+ ++ + A Sbjct: 2 PPKKAQTR--RIVSLDSLFGHTLLNITGEPVTPTKIAIFQLIRTLFHA 47 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,636,081 Number of Sequences: 27780 Number of extensions: 364030 Number of successful extensions: 849 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 820 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 849 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1666201324 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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