BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov2p23 (399 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81545-5|CAB04440.1| 389|Caenorhabditis elegans Hypothetical pr... 79 9e-16 Z46267-2|CAC42301.1| 600|Caenorhabditis elegans Hypothetical pr... 79 9e-16 Z46267-1|CAC42302.1| 389|Caenorhabditis elegans Hypothetical pr... 79 9e-16 AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ... 29 0.93 U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 27 3.7 U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 27 3.7 AC024876-12|AAF60896.2| 498|Caenorhabditis elegans Hypothetical... 27 3.7 Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical pr... 26 8.7 >Z81545-5|CAB04440.1| 389|Caenorhabditis elegans Hypothetical protein F49H6.5 protein. Length = 389 Score = 79.4 bits (187), Expect = 9e-16 Identities = 37/77 (48%), Positives = 43/77 (55%) Frame = +3 Query: 168 RVEAAASLSDLHGRRHNYLRISLTERCNLRCKYCMPAEGVPXXXXXXXXXXXXXXXIXGA 347 R + D+ R H YLRISLTE+CN RC YCMPAEG+P + Sbjct: 58 RAKGQLPFFDMFMREHTYLRISLTEKCNFRCLYCMPAEGIPLKPKDKMLSNSEVLRLVKL 117 Query: 348 LAAAGVDKLRXTGGEPT 398 AA GVDK+R TGGEPT Sbjct: 118 FAAHGVDKVRLTGGEPT 134 >Z46267-2|CAC42301.1| 600|Caenorhabditis elegans Hypothetical protein F49E2.1b protein. Length = 600 Score = 79.4 bits (187), Expect = 9e-16 Identities = 37/68 (54%), Positives = 41/68 (60%) Frame = +3 Query: 195 DLHGRRHNYLRISLTERCNLRCKYCMPAEGVPXXXXXXXXXXXXXXXIXGALAAAGVDKL 374 D+ R H YLRISLTE+CN RC YCMPAEGVP + AA GVDK+ Sbjct: 67 DMFMREHTYLRISLTEKCNFRCLYCMPAEGVPLKPKDKMLSNSEVLRLVKLFAAHGVDKV 126 Query: 375 RXTGGEPT 398 R TGGEPT Sbjct: 127 RLTGGEPT 134 >Z46267-1|CAC42302.1| 389|Caenorhabditis elegans Hypothetical protein F49E2.1a protein. Length = 389 Score = 79.4 bits (187), Expect = 9e-16 Identities = 37/68 (54%), Positives = 41/68 (60%) Frame = +3 Query: 195 DLHGRRHNYLRISLTERCNLRCKYCMPAEGVPXXXXXXXXXXXXXXXIXGALAAAGVDKL 374 D+ R H YLRISLTE+CN RC YCMPAEGVP + AA GVDK+ Sbjct: 67 DMFMREHTYLRISLTEKCNFRCLYCMPAEGVPLKPKDKMLSNSEVLRLVKLFAAHGVDKV 126 Query: 375 RXTGGEPT 398 R TGGEPT Sbjct: 127 RLTGGEPT 134 >AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical protein Y8A9A.2 protein. Length = 1360 Score = 29.5 bits (63), Expect = 0.93 Identities = 16/66 (24%), Positives = 21/66 (31%) Frame = +1 Query: 199 YMVVDTTTCEYLSLSDATCDASTACRRKACPCPVAARCCQWKSCG*XWARWRPPAWTSCG 378 Y +D+ Y + T P P CC W W T+CG Sbjct: 619 YFPLDSCCAGYTATVSGTLHICGPQPTTTTPAPNDETCCPLDGIWGAWGEWSVCTGTTCG 678 Query: 379 SPXGSR 396 + GSR Sbjct: 679 NCGGSR 684 >U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1 x-hybridizingprotein 1, isoform b protein. Length = 1169 Score = 27.5 bits (58), Expect = 3.7 Identities = 8/15 (53%), Positives = 10/15 (66%) Frame = +1 Query: 253 CDASTACRRKACPCP 297 C +T CR K+C CP Sbjct: 738 CKGNTVCRNKSCQCP 752 >U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1 x-hybridizingprotein 1, isoform a protein. Length = 1876 Score = 27.5 bits (58), Expect = 3.7 Identities = 8/15 (53%), Positives = 10/15 (66%) Frame = +1 Query: 253 CDASTACRRKACPCP 297 C +T CR K+C CP Sbjct: 835 CKGNTVCRNKSCQCP 849 >AC024876-12|AAF60896.2| 498|Caenorhabditis elegans Hypothetical protein Y94H6A.1 protein. Length = 498 Score = 27.5 bits (58), Expect = 3.7 Identities = 10/18 (55%), Positives = 11/18 (61%) Frame = -1 Query: 201 VGRLMRPPPPHGCHHCTI 148 VGRL PPPP HC + Sbjct: 55 VGRLKMPPPPPKLKHCEV 72 >Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical protein M02G9.3 protein. Length = 294 Score = 26.2 bits (55), Expect = 8.7 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%) Frame = +1 Query: 223 CEYLSLSDA-TCDASTACRRKACPCPVAARCCQWKSC 330 C +++S +C + + AC P R CQ SC Sbjct: 81 CTSITISSGPSCSSCQSACSSACTTPTCIRTCQRNSC 117 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,947,851 Number of Sequences: 27780 Number of extensions: 182501 Number of successful extensions: 523 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 487 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 510 length of database: 12,740,198 effective HSP length: 74 effective length of database: 10,684,478 effective search space used: 619699724 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -