Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10c12
(600 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL034393-13|CAA22317.1| 340|Caenorhabditis elegans Hypothetical... 108 3e-24
U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated p... 32 0.36
U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein. 32 0.36
Z81568-3|CAB04592.1| 643|Caenorhabditis elegans Hypothetical pr... 31 0.83
AF016672-8|AAB66117.4| 998|Caenorhabditis elegans Jnk interacti... 31 0.83
Z72512-6|CAD44143.2| 657|Caenorhabditis elegans Hypothetical pr... 29 1.9
U40802-3|AAM81105.1| 369|Caenorhabditis elegans Dense body prot... 29 2.5
U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body prot... 29 2.5
U40802-1|AAM81106.1| 999|Caenorhabditis elegans Dense body prot... 29 2.5
J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein ( C.ele... 29 2.5
AL034488-1|CAA22455.1| 625|Caenorhabditis elegans Hypothetical ... 29 2.5
AL117206-9|CAL22706.1| 292|Caenorhabditis elegans Hypothetical ... 29 3.3
AL034488-6|CAA22450.2| 467|Caenorhabditis elegans Hypothetical ... 29 3.3
Z74033-3|CAA98477.1| 407|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z30973-2|CAA83221.2| 163|Caenorhabditis elegans Hypothetical pr... 28 4.4
AF036701-5|AAB88367.1| 125|Caenorhabditis elegans Hypothetical ... 28 4.4
AL032654-6|CAB54465.1| 467|Caenorhabditis elegans Hypothetical ... 27 7.7
>AL034393-13|CAA22317.1| 340|Caenorhabditis elegans Hypothetical
protein Y18D10A.17 protein.
Length = 340
Score = 108 bits (259), Expect = 3e-24
Identities = 59/116 (50%), Positives = 74/116 (63%), Gaps = 6/116 (5%)
Frame = +1
Query: 121 MSSGMPELGSKISLISKADIRYEGRLFTVDPQECTIALASVRSFGTEDRETQYPVAPQSQ 300
MS+ P +GSKISLISK DIRYEG L+TVD + TIALA VRSFGTE R T PVA +
Sbjct: 1 MSNQTPYIGSKISLISKLDIRYEGILYTVDTNDSTIALAKVRSFGTEKRPTANPVAARDD 60
Query: 301 VYDYILFRGSDIKDI------RVLNNVPSMPNDPAIMQMSVPPTLGTGPAPGQYVG 450
VY+YI+F+ SDIKD+ ++ N +P DPAI+ +S + AP G
Sbjct: 61 VYEYIIFKASDIKDLIVCDTPKMANIGGGLPYDPAIISVSSRSAPASDGAPAASAG 116
>U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated
protein 40 protein.
Length = 1415
Score = 31.9 bits (69), Expect = 0.36
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +3
Query: 363 SFNAQ*SCHYADVCTPNSGYW---TSSWAVCGAV*PSSCWTNSISSVSSNGWLSKWS 524
+FN Q + Y+ N + T +WA + P++ + ++ +V+SNG LS WS
Sbjct: 876 AFNTQYTVRYSTAVDGNQHRYVNSTETWATVEGLRPATEYEFAVRAVASNGQLSTWS 932
>U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.
Length = 1415
Score = 31.9 bits (69), Expect = 0.36
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +3
Query: 363 SFNAQ*SCHYADVCTPNSGYW---TSSWAVCGAV*PSSCWTNSISSVSSNGWLSKWS 524
+FN Q + Y+ N + T +WA + P++ + ++ +V+SNG LS WS
Sbjct: 876 AFNTQYTVRYSTAVDGNQHRYVNSTETWATVEGLRPATEYEFAVRAVASNGQLSTWS 932
>Z81568-3|CAB04592.1| 643|Caenorhabditis elegans Hypothetical
protein K08E3.4 protein.
Length = 643
Score = 30.7 bits (66), Expect = 0.83
Identities = 20/73 (27%), Positives = 31/73 (42%)
Frame = +1
Query: 364 PSMPNDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQYHPMAGFPSGVHNQLNK 543
P+ P A + PP PAP Y Q++ P V ++ P P++ PS +Q +
Sbjct: 470 PAPPTFLAPTPVIAPPPPEPTPAPSHYASQYDAPPVHESFEPAVPPVSA-PSHYASQYDA 528
Query: 544 TSSMLDLIGGGSQ 582
+D SQ
Sbjct: 529 PPEPIDSHSSSSQ 541
>AF016672-8|AAB66117.4| 998|Caenorhabditis elegans Jnk interacting
protein (scaffoldprotein) protein 1 protein.
Length = 998
Score = 30.7 bits (66), Expect = 0.83
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 376 NDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQY 495
NDP++ +P +LG+ P+P + PV GQ PQY
Sbjct: 264 NDPSVCSYRLPSSLGSAPSPSP--PRPLSPVFGQPAPPQY 301
>Z72512-6|CAD44143.2| 657|Caenorhabditis elegans Hypothetical
protein R07B5.9 protein.
Length = 657
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Frame = +1
Query: 349 VLNNVPSMP--NDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQYHPMAGFPSG 522
++N P P + P Q + P G+G P +H Q+ PMAG P+
Sbjct: 387 MINTTPQQPPFSHPNSQQQATP---GSGGVPSCGPAYTHHTPEQQSQQFMSPPMAGMPAS 443
Query: 523 V-HNQLNKTSSMLDLIGG 573
V N S+ ++++GG
Sbjct: 444 VASNHSIHNSNSIEMVGG 461
>U40802-3|AAM81105.1| 369|Caenorhabditis elegans Dense body protein
1, isoform b protein.
Length = 369
Score = 29.1 bits (62), Expect = 2.5
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = +1
Query: 349 VLNNVPSMPNDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQT-PYPQ--YHPMAGFPS 519
+ ++P+ P P +++S PP P P +Y + + P PQ + PM
Sbjct: 140 IREDIPAPPRPPPPVELSPPPR---PPPPPEYDEEEETRAFWERYPLPQASHQPMLAAAH 196
Query: 520 GVHNQLNKTSS 552
+HN+L + SS
Sbjct: 197 NLHNELKQWSS 207
>U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body protein
1, isoform a protein.
Length = 1010
Score = 29.1 bits (62), Expect = 2.5
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = +1
Query: 349 VLNNVPSMPNDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQT-PYPQ--YHPMAGFPS 519
+ ++P+ P P +++S PP P P +Y + + P PQ + PM
Sbjct: 781 IREDIPAPPRPPPPVELSPPPR---PPPPPEYDEEEETRAFWERYPLPQASHQPMLAAAH 837
Query: 520 GVHNQLNKTSS 552
+HN+L + SS
Sbjct: 838 NLHNELKQWSS 848
>U40802-1|AAM81106.1| 999|Caenorhabditis elegans Dense body protein
1, isoform c protein.
Length = 999
Score = 29.1 bits (62), Expect = 2.5
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = +1
Query: 349 VLNNVPSMPNDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQT-PYPQ--YHPMAGFPS 519
+ ++P+ P P +++S PP P P +Y + + P PQ + PM
Sbjct: 781 IREDIPAPPRPPPPVELSPPPR---PPPPPEYDEEEETRAFWERYPLPQASHQPMLAAAH 837
Query: 520 GVHNQLNKTSS 552
+HN+L + SS
Sbjct: 838 NLHNELKQWSS 848
>J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein (
C.elegans vinculin (deb-1) gene, complete cds. ).
Length = 1010
Score = 29.1 bits (62), Expect = 2.5
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = +1
Query: 349 VLNNVPSMPNDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQT-PYPQ--YHPMAGFPS 519
+ ++P+ P P +++S PP P P +Y + + P PQ + PM
Sbjct: 781 IREDIPAPPRPPPPVELSPPPR---PPPPPEYDEEEETRAFWERYPLPQASHQPMLAAAH 837
Query: 520 GVHNQLNKTSS 552
+HN+L + SS
Sbjct: 838 NLHNELKQWSS 848
>AL034488-1|CAA22455.1| 625|Caenorhabditis elegans Hypothetical
protein Y54G11A.1 protein.
Length = 625
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 494 IIQWLAFQVEFTTSSTRRAQCLTSLVEDPNKMHL 595
+I + F + T ST CL S +EDP+++HL
Sbjct: 11 LILIITFLIFTDTVSTSSDPCLDSQIEDPSQLHL 44
>AL117206-9|CAL22706.1| 292|Caenorhabditis elegans Hypothetical
protein Y67A10A.11 protein.
Length = 292
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 387 HYADVCTPNSGYWTSSWAVCGAV*PSSCWTNSISSVSSN 503
+Y C P+ GYWT +W+ V + W S + +S +
Sbjct: 111 NYTLACCPDGGYWT-TWSGYSKVSNQAAWQRSRTCLSGS 148
>AL034488-6|CAA22450.2| 467|Caenorhabditis elegans Hypothetical
protein Y54G11A.7 protein.
Length = 467
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 460 HPVVGQTPYPQYHPMAG-FPSGVHNQLNKTSSMLDLIGGGS 579
H + Y +Y G F + N+ NKT+S+LD++ S
Sbjct: 257 HTALFHIEYAEYESALGIFDREIANRFNKTNSLLDMVDASS 297
>Z74033-3|CAA98477.1| 407|Caenorhabditis elegans Hypothetical
protein F38B7.3 protein.
Length = 407
Score = 28.3 bits (60), Expect = 4.4
Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Frame = +1
Query: 382 PAIMQMSVPPTLGTG----PAPGQYV--GQFNHPVVGQTPYPQYHPMAGFPSGVH 528
P + S PP + G PA GQ G P GQ P P Y AG P+ H
Sbjct: 164 PPTVYPSAPPPVQPGYNPRPASGQSYPSGPQVPPAYGQYPQPGYPQPAGVPTSSH 218
>Z30973-2|CAA83221.2| 163|Caenorhabditis elegans Hypothetical
protein B0284.3 protein.
Length = 163
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +3
Query: 399 VCTPNSGYWTSSWAVCGAV*PSSCWTNSISSVSSNGWLSKWSSQPAQQ 542
+C +S +S WAV + PSSC +ISS+++ S S +P+ +
Sbjct: 90 ICKQSSS--SSEWAVWASPVPSSCHPANISSIATKCKKSFPSEKPSNE 135
>AF036701-5|AAB88367.1| 125|Caenorhabditis elegans Hypothetical
protein ZC416.2 protein.
Length = 125
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +1
Query: 400 SVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQYHPMAGFPSGVHN 531
+ PP P P Y G N+ G PYP P +P G +N
Sbjct: 3 NAPPPYTAQPQP--YYGNANYAPQGSNPYPAQGP---YPQGYYN 41
>AL032654-6|CAB54465.1| 467|Caenorhabditis elegans Hypothetical
protein Y52B11A.4 protein.
Length = 467
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +1
Query: 475 QTPYPQYHPMAGFPSGV--HNQLNKTSSMLDLIGG 573
Q P P++HP+ F S + ++Q K + + DL GG
Sbjct: 405 QKPSPRHHPIDDFHSAIRRYSQRKKKAPLNDLEGG 439
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,162,435
Number of Sequences: 27780
Number of extensions: 340600
Number of successful extensions: 935
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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